Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0088 ATGGCTTCAAGAGCAGTTGTTCCACGAGACCATCAACAACCCAGAGGGGAGGCAGTTGCTGGGAATGGTAAGCAGAAGAAGATTGTTGCAGCAGAGAGGAGAAACCGGCAAGCACTAGGCGATATTGGGAATCTTGTAACTATTGGAGTTGATGGCAAGCCACAGCCTCAGATCTCTCGCCCCATTACAAGGGGTTTCTGTGCACAATTACTCGCCAAAGCAAAAGAAGCTGAAAACAACAAGAAAGCAGTCCGTGCTAATGTGGATGGAGCTCAACTCCGTGCTAATGTGGATGGAGCTCTTCTTGTTACCAATGGAGCTGCAGCAGGTAAAGGACCTGAGGCAGAAAAGGCAGCTCAGAAGAAGGTTGCAGTCAAGACAAAGCCTGAGGCAGTGATTGAATTGAGCTCAGATACAGAAGAGGTTAAGAAAGAGAAGCCAATAAACACCAAAAAGACCGGAGAAGGATCCTCGAGGAAGAAAGTCCAGACTATGACTTCCATCCTTACTTCTAGGAGCAAGGCAGCTTGTGGTTTGACCGATAAAAAACCGAAGGAGCAGATTGTTGATATTGATGCAGCTGATGCTAATAATGAGTTGGCTGTGGTAGAATACGTTGAGGACATTTATAAGTTCTACAAACTGATTGAGAGTGAGAGCCACATTCATGACTATATGGACTCCCAGCCTGAGATGAATGAGAAGATGAGATCAATTCTGGTGGATTGGTTAATTGAAGTTCACCATAAATTTGAACTTATGCCAGAGACCCTCTACCTTACAATCAACATAATCGACCGGTTCCTTTCAGTCAAGACTGTGCCAAGGAGGGAACTGCAGTTGGTAGGCATCAGTGCCATGCTGATAGCCTCCAAATACGAAGAAATTTGGGCCCCAGAGGTCAATGACTTTGTCTGCATCTCAGACAGAGCTTATAGTGATCAGCAGATAAGGAACATGGAGAAAGCTATACTGGGCAGGCTAGAATGGACCTTGACAGTTCCGACGCCTTATGTTTTCCTTGTTCGTTTCATTAAGGCCTCCATTCCTGATCAGGAGATGGAACATATGGTCTACTTCTATGCTGAACTTGGCTTGGCTAACTATGCCACCATGATGTACTGCTCATCTATGTTTGCTGCCTCATCGGTGTATGCTGCGCGGTGTGCCCTGAACAAAAGCCCTGTTTGGGATGAAACACTAAAAGCCTATACTGGTTTCTCAGAAGCACAGCTACTGGATTGTGCTAAGCTCCTTGCAAGTTTCCACTCAATGGCTGCAGAAAACAAGCTGATCAAGGCTGTGTATAGGAAGTACTCTCAGCCTCATAGAAGTGGGGTTGCATTTCGTCCACCAGCCAAGGTCCTCTTGGCTGCTGCTGCATCATGA 1389 0.4622 MASRAVVPRDHQQPRGEAVAGNGKQKKIVAAERRNRQALGDIGNLVTIGVDGKPQPQISRPITRGFCAQLLAKAKEAENNKKAVRANVDGAQLRANVDGALLVTNGAAAGKGPEAEKAAQKKVAVKTKPEAVIELSSDTEEVKKEKPINTKKTGEGSSRKKVQTMTSILTSRSKAACGLTDKKPKEQIVDIDAADANNELAVVEYVEDIYKFYKLIESESHIHDYMDSQPEMNEKMRSILVDWLIEVHHKFELMPETLYLTINIIDRFLSVKTVPRRELQLVGISAMLIASKYEEIWAPEVNDFVCISDRAYSDQQIRNMEKAILGRLEWTLTVPTPYVFLVRFIKASIPDQEMEHMVYFYAELGLANYATMMYCSSMFAASSVYAARCALNKSPVWDETLKAYTGFSEAQLLDCAKLLASFHSMAAENKLIKAVYRKYSQPHRSGVAFRPPAKVLLAAAAS* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0088 462 PANTHER CYCLINS 159 441 IPR039361 -
Vvi13g0088 462 Gene3D - 208 448 - -
Vvi13g0088 462 Gene3D - 222 333 - -
Vvi13g0088 462 MobiDBLite consensus disorder prediction 1 27 - -
Vvi13g0088 462 SUPERFAMILY Cyclin-like 197 332 IPR036915 -
Vvi13g0088 462 PIRSF Cyclin_A_B_D_E 1 462 IPR046965 GO:0016538|GO:0044772
Vvi13g0088 462 Pfam Cyclin, N-terminal domain 208 332 IPR006671 -
Vvi13g0088 462 Coils Coil 67 94 - -
Vvi13g0088 462 ProSitePatterns Cyclins signature. 237 268 IPR006671 -
Vvi13g0088 462 MobiDBLite consensus disorder prediction 137 158 - -
Vvi13g0088 462 SMART Cyclin_C_2 335 453 IPR004367 -
Vvi13g0088 462 MobiDBLite consensus disorder prediction 137 164 - -
Vvi13g0088 462 Pfam Cyclin, C-terminal domain 335 451 IPR004367 -
Vvi13g0088 462 CDD CYCLIN_AtCycB-like_rpt1 185 330 - -
Vvi13g0088 462 FunFam G2/mitotic-specific cyclin 221 333 - -
Vvi13g0088 462 SUPERFAMILY Cyclin-like 334 454 IPR036915 -
Vvi13g0088 462 SMART cyclin_7 242 326 IPR013763 -
Vvi13g0088 462 SMART cyclin_7 339 421 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0088 Vvi-Chr13 806699 809476 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0088 1 462 Core Cell Cycle Gene Families AT4G37490 50.746 3.64e-136 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0088 K21777 - vvi:100253549 874.774