Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0087 ATGGAGACCAACTTTGTACGTGTCAAAGAGGCGGTTTTGGTGGCTCCTTCTGAAACCACGCCGTCTCGTGTTCTCGCTCTTTCGGCTCTGGACTCTCAGCTGTTTCTGCGGTTCTCCATTGAGTACCTTCTGGTGTATCAGTCTCGTCCTTGCTCCGACCATGGGGTGACCGCGGATCATGTCAAGGCGGCACTGGGTCGAGCCCTGGTTCCGTATTATCCGCTGGCGGGGAGGGTTAGGGTTGGGTCGAGTGGTTCGAATCTGGAGGTGGTGTGTCGAGCTCAGGGCGCGGTGTTCATTGAGGCTGTTTCGGACCTCACCGTCGCCGACTTCGAGAGGACCCCTAGGCACGTGACGCAGTGGAGGAAGCTACTGTCGCTGTACGTGGAGGATGTGCTCCGGGGCGCGCCGCCGCTGGTGGTTCAACTGACGTGGCTAGCCGATGGCGGGGCTGCGCTAGGTGTCGGCATCAACCATTGTCTCTGCGACGGCATCGGCAGCGCCGAGTTCCTCAACGCATTCGCTGAGTTGGCCACCGGCCGCGGCGGCCTCTCTGAGTTCAAGCCCAAACCGGTGTGGGACCGCCACCTTCTCGATCCGAAACCCCTCGAACCTCCCCGCAGAGCCTCCTCATCTACTCACCCCGAGTTCAACTCAGTCCCAGACCTCTCCGGTTTCGTAACTCGCTTCTCCCAGGAACCACTCGTCCCCACCTCAATCACCTTCGACAAACGATGCCTCAATGAGCTCAAACAACTCGCCTCCTGCACGGGTCGACCCAGCGAGTCCTCATACACGTCCTTTGAAATCCTCTCAGCTCACGTATGGAGAAGCTGGGCCAGAGCTCTGAATATGCCATCAAACCAGACCCTCAAACTCCTCTTCAGCATCAACATTCGAAACCGAGTCAAGCCAAGTCTCCCACCGGGTTACTACGGCAACGCGTTTGTACTTGGCTGCGCCCAAACCACCGTGAAGGAGATAACAGAGAAAGGCTTGGGACACATGTGTGGTTTGGTGAAGCGAGCGAAGGAGAGAGTAGGAGATGAGTACGTGAGGAGAGTGGTGGATATGGTGAGTGGCGAGTCGAGGGCGAGTCCTGACTCAGTGGGAGTGCTGATACTGTCACAGTGGTCAAGGCTAGGGCTAGAGAGGGTTGACTTTGGGATGGGGATACCAGTCAATGTAGGACCCATATGCAGCGATAGATACTGTTTGATGTTGCCGGTGTCTGATCAGAGGGACGCCGTGAAGGTTATGGTGGCGGTCCCCACATCTGCCGTTGACCAATATATACATTTGATAGGGAGTCCCTACTCTTAA 1323 0.5692 METNFVRVKEAVLVAPSETTPSRVLALSALDSQLFLRFSIEYLLVYQSRPCSDHGVTADHVKAALGRALVPYYPLAGRVRVGSSGSNLEVVCRAQGAVFIEAVSDLTVADFERTPRHVTQWRKLLSLYVEDVLRGAPPLVVQLTWLADGGAALGVGINHCLCDGIGSAEFLNAFAELATGRGGLSEFKPKPVWDRHLLDPKPLEPPRRASSSTHPEFNSVPDLSGFVTRFSQEPLVPTSITFDKRCLNELKQLASCTGRPSESSYTSFEILSAHVWRSWARALNMPSNQTLKLLFSINIRNRVKPSLPPGYYGNAFVLGCAQTTVKEITEKGLGHMCGLVKRAKERVGDEYVRRVVDMVSGESRASPDSVGVLILSQWSRLGLERVDFGMGIPVNVGPICSDRYCLMLPVSDQRDAVKVMVAVPTSAVDQYIHLIGSPYS* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0087 440 Gene3D - 3 219 IPR023213 -
Vvi13g0087 440 Gene3D - 224 432 IPR023213 -
Vvi13g0087 440 Pfam Transferase family 6 427 - -
Vvi13g0087 440 SUPERFAMILY CoA-dependent acyltransferases 27 180 - -
Vvi13g0087 440 MobiDBLite consensus disorder prediction 196 217 - -
Vvi13g0087 440 PANTHER ACYL TRANSFERASE 4 6 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0087 Vvi-Chr13 801393 802715 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0087 6 423 Monolignol Biosynthesis Gene Families AT5G48930 27.126 8.27e-45 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0087 - - vvi:100262051 882.863