Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0086 ATGGACTGTGAAGACCAAGACACCAAGCCCATTACCACCACCACCACTTCTAACGAGACTAATAGCAGCAACAGTTCTTCCGCAACCGCCGGCGCCACCAGTTGCGGTGGTGATAACGGCAGCAACGGGAATAGTAGGAAGTGTAAGGGCAAAGGAGGGCCTGATAACAGTAAGTTCAAGTACAGAGGTGTGAGACAGCGGAGTTGGGGGAAGTGGGTGGCGGAGATCCGGGAGCCTCGCAAGCGCACGCGTAAATGGCTCGGCACCTTCGCCACCGCTGAGGACGCCGCTCGAGCCTACGACCGTGCAGCCATCATTCTCTACGGCAGCAGAGCTCAGCTCAACCTCCAACCGTCCGTCTCCTCCGCCTCGTCCTCCAGCCGCGGAAGCTCGTCGTCGTCGAGCGGCACTCAAACGCTCCGCCCATTGCTCCCTCGTCCATCTGGGTTCGGCCTCACTTTCTCTTCTCCCTCTGCCACCCCGCACACGGCGGGGGGATACGTGCCGTACGGGTTCAGCCACGGTATGGATTCGTCCGTACTATGTGGAAACGTGGTGCAGAGTCAACAGCAACTGGTGCAACAGCAGCATCAGCTGCTATATCCACCGTCTGATATGAATGTTGCTGCTGATCCCATCACGACAGCAACAATAACAACTTATCCAAACCCTAATCATCATCATCACCACCACCACCATCATCCTTATCAGCAAAATTGTTTGTACGATGAAATCAACTCATTGGTGGGCTCAGTTGGACCGAGTTTGTCTCTCTCTTCTCAACCTGGGGTTGCACCGGCGCAGCCGGATCAGGCTCTCTCCGTCGGCCTTGGATCTCCGTCTCTGTGGCCGTTGAACGACGAGGATGAGTATCCACCTTCATGTATCTGGGACTATGGAGATCCCTTCTTTGATTTCTGA 921 0.557 MDCEDQDTKPITTTTTSNETNSSNSSSATAGATSCGGDNGSNGNSRKCKGKGGPDNSKFKYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAIILYGSRAQLNLQPSVSSASSSSRGSSSSSSGTQTLRPLLPRPSGFGLTFSSPSATPHTAGGYVPYGFSHGMDSSVLCGNVVQSQQQLVQQQHQLLYPPSDMNVAADPITTATITTYPNPNHHHHHHHHHPYQQNCLYDEINSLVGSVGPSLSLSSQPGVAPAQPDQALSVGLGSPSLWPLNDEDEYPPSCIWDYGDPFFDF* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0086 306 FunFam Ethylene-responsive transcription factor 2 60 118 - -
Vvi13g0086 306 PRINTS Ethylene responsive element binding protein signature 83 99 IPR001471 GO:0003700|GO:0006355
Vvi13g0086 306 PRINTS Ethylene responsive element binding protein signature 61 72 IPR001471 GO:0003700|GO:0006355
Vvi13g0086 306 ProSiteProfiles AP2/ERF domain profile. 60 117 IPR001471 GO:0003700|GO:0006355
Vvi13g0086 306 MobiDBLite consensus disorder prediction 8 46 - -
Vvi13g0086 306 SUPERFAMILY DNA-binding domain 60 118 IPR016177 GO:0003677
Vvi13g0086 306 MobiDBLite consensus disorder prediction 119 142 - -
Vvi13g0086 306 Pfam AP2 domain 60 108 IPR001471 GO:0003700|GO:0006355
Vvi13g0086 306 Gene3D AP2/ERF domain 59 117 IPR036955 GO:0003700|GO:0006355
Vvi13g0086 306 SMART rav1_2 60 123 IPR001471 GO:0003700|GO:0006355
Vvi13g0086 306 CDD AP2 60 117 IPR001471 GO:0003700|GO:0006355
Vvi13g0086 306 MobiDBLite consensus disorder prediction 1 62 - -
Vvi13g0086 306 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 24 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0086 Vvi-Chr13 792365 793285 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0086 46 304 AP2-EREBP Transcription Factor Family AT2G40220 46.309 1.68e-50 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi13g0086 AP2 5.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0086 K09286 - vvi:104881092 502.671