Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0085 ATGGCTTGTGTGCCAAGGACCACTGCACCATCATGGTCATGCCAAGACAGTGAAGCCTCTGCAGAGCTCAAGCTCATAGTGATGGCTGTAATGCTTGGAACCAGCATTGTGAGCATCTCTTCACCTTTGATTTTCTCTCATTTCATTCACTGGAAGCCCATTCACAGTAAACTTCTTCTAGCTATCAAATGCTTGGCAGCTGGTGTAATTCTCTCTATTTCACTTGTCCATGTCCTTCCTCGTTCATTTGATTCCCTCTCCGACTGCCAAGTCGTGTCCCTCCGTCCATGGAAGGACTTACCCTTCTCGGGTATTGTTCCGATCATCGGAGCAGTCACGGCATTGCTGGTGGATATCATGCAGAGTTGTTATGGGAATGATAAGAGCAGTCACTATGCGCCCGTGAAGACACACGAGGATTCTTCTTCTGATGGGAAGAAAACTGTGACTACTCAATTTGAAATGGGGATAATGGGGTGGCATGATCGGCAAGCGGAGGAGATGGCGAAACTGAAGCAGAGGCTGGTTGCTCAAGTTTTGGAGATTGGGGTAGTGTTCTACCCGGTGATTATAGGGCTGATGACGGGAGTTTCTCACAACCTTTGCACCGTAAAAGCTCTGGTTGCTGCCCTGGTGCTTCACCATTTCTTTGAAGGAATAGAGCTAGGTGGCTGCATGGCACAGGCAGGCTTGAACTTCGGAACAACAGCATATATGTGCATCGTGTTTTCAGTAACTGCACCAATTGGGATGGTTTTGGGCATGATATTATATACAGCCACTGGTTATGAGCCCAGAAGCGCCAATGCCTTGATCATGGAAGGAATATCGGGGTCTCTAGCGTCTGGCATACTGCTATACATGGCGTTTGTCAAATTTACAGCGGTTGAATTCTTCTACAGCAAGGTGATGATGGGGTCTAGGCCATGGATGAAGAAGCTGTGCTTCTTTCTTTTTGTTGTTGGGTGTGCTTCTATGGCATTTCTCATCATCTGGGACAGCATGCCTTCGGTGAAAAGCTTGGCCTCTGCCCCTCTGGATTGTGGTGCCTCAACAGGTGATTGTAGAAGTGGGATGTCAGCCTACATGATCACTGGAGGCAAATCCTTGCAGAAGTTCCATAACACAGTTTGTCCCGACTGCAAACCCATCAGGACCGTCGATGATAACAGCGGTGCCGAAGTCCGGCGACTCTGCTCCTCATGTCGCTCAGTTCCATCTCCGGCGGGAACTTGGGCAATCCGAACAAGCAGGCGTGCTTCTTCAACCTCGCCGGCGACTCCAAGATGCAGGATTCTAACTCTGTATTTTTCATTTTCGTGGGTTTTGATCCTCTCATCTGATGATTCTGATCTTCTCCACAATTTCTACTCCAACTCGGGTATCGGTCCGGTACCGGCCATGGTCGAGGCGGATACGACTCGGCCGAGTCGTACCGGTCTCGACCGAGATTTTGAACCATGA 1464 0.4925 MACVPRTTAPSWSCQDSEASAELKLIVMAVMLGTSIVSISSPLIFSHFIHWKPIHSKLLLAIKCLAAGVILSISLVHVLPRSFDSLSDCQVVSLRPWKDLPFSGIVPIIGAVTALLVDIMQSCYGNDKSSHYAPVKTHEDSSSDGKKTVTTQFEMGIMGWHDRQAEEMAKLKQRLVAQVLEIGVVFYPVIIGLMTGVSHNLCTVKALVAALVLHHFFEGIELGGCMAQAGLNFGTTAYMCIVFSVTAPIGMVLGMILYTATGYEPRSANALIMEGISGSLASGILLYMAFVKFTAVEFFYSKVMMGSRPWMKKLCFFLFVVGCASMAFLIIWDSMPSVKSLASAPLDCGASTGDCRSGMSAYMITGGKSLQKFHNTVCPDCKPIRTVDDNSGAEVRRLCSSCRSVPSPAGTWAIRTSRRASSTSPATPRCRILTLYFSFSWVLILSSDDSDLLHNFYSNSGIGPVPAMVEADTTRPSRTGLDRDFEP* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0085 487 PANTHER ZINC/IRON TRANSPORTER 22 327 - -
Vvi13g0085 487 NCBIfam ZIP zinc/iron transport family 13 332 IPR004698 GO:0005385|GO:0016020|GO:0071577
Vvi13g0085 487 Pfam ZIP Zinc transporter 22 329 IPR003689 GO:0016020|GO:0030001|GO:0046873|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0085 Vvi-Chr13 786146 789613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0085 2 332 Inorganic Solute Cotransporters AT2G30080 46.705 1.22e-102 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0085 K14709 - vvi:100267220 663.299