Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0084 ATGACTCTGACCACCGGCGGTGATCGGATCAAGGGTTCTTGGAGCCCACAAGAGGATGCTTCTCTTGTCAAGCTTGTTGAGGAGCATGGTCCCAGAAACTGGTCTCTGATCAGCGCCGGCATACCAGGTCGTTCCGGCAAGTCGTGTAGGCTGAGGTGGTGCAATCAGCTTAGTCCGGAGGTGCAGCACCGGCCATTTAGTCCGGCAGAGGACGCCGTCATCGTTCAGGCGCATGCCGTTCACGGCAACAAGTGGGCTACTATTGCGCGTATCTTGCCCGGGCGGACGGATAATGCGATTAAGAATCACTGGAACTCGACTCTCCGGCGGCGTCGGGTTGGGGAGCTGTCGTCGGCGTCGTCAGAGTCGAACTCAGCGATGAAGCGCCCGAGTTTTGATGCAACAGTGTCGTCCGAGTCGGACTCGGGACTAAAGCGGCAGCTCGTTGGCGCATCGCCGGAGCACAACAGCTGCGATAGGGTTAAGGCCGAGCCGGAGACGTCGCTAACGCTATCCCCGCCGGGAGATAGTGTGGTAACGTTACCCGTGGGTGATAGAGTGGAGGATGCTCGAGATGAAGGGGCGCGCATCACGAGGAAAGAAGGGGAGAGGTGTGCGGTGGAGATGGCGGACACGTGCTTGGTAAAGATAATACAGCGTATGATAGCGGAGGAGGTTAGGAATTACTTCATCGCGTTACGGGCAGAGGATGGGCTTCGGGTTAGGCCTGAGCTCGACCCAGCGGCCCAAAATAATCCCTAA 762 0.5801 MTLTTGGDRIKGSWSPQEDASLVKLVEEHGPRNWSLISAGIPGRSGKSCRLRWCNQLSPEVQHRPFSPAEDAVIVQAHAVHGNKWATIARILPGRTDNAIKNHWNSTLRRRRVGELSSASSESNSAMKRPSFDATVSSESDSGLKRQLVGASPEHNSCDRVKAEPETSLTLSPPGDSVVTLPVGDRVEDARDEGARITRKEGERCAVEMADTCLVKIIQRMIAEEVRNYFIALRAEDGLRVRPELDPAAQNNP* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0084 253 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 57 IPR017930 -
Vvi13g0084 253 CDD SANT 65 108 IPR001005 -
Vvi13g0084 253 SMART sant 10 59 IPR001005 -
Vvi13g0084 253 SMART sant 62 110 IPR001005 -
Vvi13g0084 253 FunFam MYB transcription factor 11 62 - -
Vvi13g0084 253 MobiDBLite consensus disorder prediction 115 145 - -
Vvi13g0084 253 SUPERFAMILY Homeodomain-like 9 104 IPR009057 -
Vvi13g0084 253 Gene3D - 65 111 - -
Vvi13g0084 253 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 112 IPR017930 -
Vvi13g0084 253 ProSiteProfiles Myb-like domain profile. 6 57 IPR001005 -
Vvi13g0084 253 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Vvi13g0084 253 PANTHER MYB PROTEIN-RELATED 11 130 - -
Vvi13g0084 253 CDD SANT 13 55 IPR001005 -
Vvi13g0084 253 Pfam Myb-like DNA-binding domain 65 107 IPR001005 -
Vvi13g0084 253 Pfam Myb-like DNA-binding domain 11 57 IPR001005 -
Vvi13g0084 253 Gene3D - 10 62 - -
Vvi13g0084 253 MobiDBLite consensus disorder prediction 115 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0084 Vvi-Chr13 768216 768977 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0084 8 144 MYB Transcription Factor Family AT3G50060 60.839 3.60e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi13g0084 Myb_DNA-binding 2.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0084 - - vvi:100260493 508.064