Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0083 ATGGAGAATTGCCTTTATTCTGGTTGGGCTCAAGAGGCTGATTGCACTCAATGTGATGCAGCACCTGTACTTCCATGGCTGCCACCTCCTCATGTTTCTGCCTCATTCCAATTCCATGGATTCCCTTCATGGTCTTTACCCGTTGAAAAGATGGCAACAGAGGATAGATCAGATGAGAGGACTGCAACAGCTTCCAAGAGCCACAGCCAGGCGGAGAAGCGGCGTAGGGATAGAATCAACGCGCAGCTTGCCACTCTCAGGAAGCTAATCCCCAAGTCTGAAAAGATGGACAAGGCAGCTCTCCTAGGAAGCGTAATCGATCATGTCAAGGATCTGAAGAGACAAGCGATGGAAGTGAGCGACGTTTTCACAGTTCCAACTGAAGTTGATGAAGTGACCGTGGACTGTGAATTTGATCAAGGATTAGTCCCCAACAACACCATTAAAACCCCAGAGAATATCTTCATCAAAGCATCCGTCTGCTGTGAAGATCGTCCAGAGCTGTTCTCAGAGCTCATCCGAGCTCTCCAAGGCCTGAAACTGACAACGATTCGAGCAGATATGGCGAGTTTGAGTGGCAGAACTAAAAGCATTCTGGTTCTTTGCAGCAAGGATGACAGCAACAGTGTCTGCATTAGCACTCTCAAACAGTCCCTTAAAGTGGTTTTGAGTAGAATTGTTTCATCATCCACAGCTTCAAACTACCGCATTACAAGCAAAAGGCAAAGGTTCTTCTTGCCCTCTAATTTCCCACAATGA 759 0.4704 MENCLYSGWAQEADCTQCDAAPVLPWLPPPHVSASFQFHGFPSWSLPVEKMATEDRSDERTATASKSHSQAEKRRRDRINAQLATLRKLIPKSEKMDKAALLGSVIDHVKDLKRQAMEVSDVFTVPTEVDEVTVDCEFDQGLVPNNTIKTPENIFIKASVCCEDRPELFSELIRALQGLKLTTIRADMASLSGRTKSILVLCSKDDSNSVCISTLKQSLKVVLSRIVSSSTASNYRITSKRQRFFLPSNFPQ* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0083 252 PANTHER TRANSCRIPTION FACTOR BHLH30 48 247 IPR045847 GO:0003700|GO:0006355
Vvi13g0083 252 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 63 112 IPR011598 GO:0046983
Vvi13g0083 252 Pfam Helix-loop-helix DNA-binding domain 66 112 IPR011598 GO:0046983
Vvi13g0083 252 SMART finulus 69 118 IPR011598 GO:0046983
Vvi13g0083 252 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 55 117 IPR036638 GO:0046983
Vvi13g0083 252 CDD bHLH_AtAIG1_like 58 135 - -
Vvi13g0083 252 Gene3D - 57 121 IPR036638 GO:0046983
Vvi13g0083 252 MobiDBLite consensus disorder prediction 52 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0083 Vvi-Chr13 765498 766473 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0083 59 252 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 46.500 7.61e-45 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi13g0083 HLH 5.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0083 - - vvi:100265720 488.804