Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0079 ATGCAGTGCGCTGTGGCTGTAGCGAGCTCTCCCGTGTTCTCACCGTCCAGGGTTTCTTCAGTCTTCTGCAAATCATCGGTTTCGTCTCCCGACCTTCGGAAGCTTAATCTCCTCCGCTCTCCGCCACCGTTGACACCCTCATCGTCACTGTCGTTGCCGGCGTCTCCGAGGCTACACAAGCAGGAAATTGTGCACAAGGAATTTCAGGAGGGGTTGTCGGTCGCGCCAACTACGGCTTCGAAACGGAAGAGGCCGGCGAAGTTGAGTATTCCGATGATTCCGGCGTGTTGCTTCGCGCTTGATTCGCCGGCGAGAGTGGAGAGGTTGGATGAGGTGGAGGTTGAGGGGGAGGGATACTCGGTGTATTGTAAGAGAGGGAGGAGGGCTGCCATGGAGGATCGCTACTCGGCTGATGTTGATCTCGGAGGAGATTCTAAACAGGCTTTCTTTGGTGTTTTTGATGGGCATGGAGGAGCAAAAGCTGCTGATTTTGCAGCAAAGAACATTACTAAGAATGTGATGGCTGAAGTGACAAAGAAAGGGGATGAAGGAATCGAGGTGGCAATAAAAAATGGTTACCTGGCCACTGATGCAGAGTTTTTGAAGGAAGATGTTAGTGGTGGTTCTTGCTGTGTGACTGCATTGATTCGGGAAGGTGAACTTCATGTCTCAAATGCAGGTGATTGTCGTGCTGTTATGAGCAGAGGAGGAATTGCTGAAGCCCTCACATCTGATCACCGACCTTCAAGGGAAGATGAAATGGATAGGATTCAAACTCTGGGTGGATATGTGGACCGTTGCCATGGTGTTTGGAGAATACAGGGTTCTCTTGCTGTGTCAAGAGGAATTGGAGACAGAAATCTTAAACAATGGGTAACAGCAGAACCAGAGACAAAAAGTTTAAAGATAAAACCCGAATGCGAGTTCTTAATCCTAGCTTCTGATGGCCTATGGGACAAGGTTACAAATCAGGAAGCAGTAGATGTAGTCCGGCCTTTATGCATAGGAGTTGATAAGCCAGAGCCATTTTCTGCTTGTAAAAATCTTGCTCGCCTGGCAATAAGGGGAGGCTCCACGGATGATATAAGTGTGATGGTAATCCAGTTAAGTCACTTCCTTTCATGA 1125 0.488 MQCAVAVASSPVFSPSRVSSVFCKSSVSSPDLRKLNLLRSPPPLTPSSSLSLPASPRLHKQEIVHKEFQEGLSVAPTTASKRKRPAKLSIPMIPACCFALDSPARVERLDEVEVEGEGYSVYCKRGRRAAMEDRYSADVDLGGDSKQAFFGVFDGHGGAKAADFAAKNITKNVMAEVTKKGDEGIEVAIKNGYLATDAEFLKEDVSGGSCCVTALIREGELHVSNAGDCRAVMSRGGIAEALTSDHRPSREDEMDRIQTLGGYVDRCHGVWRIQGSLAVSRGIGDRNLKQWVTAEPETKSLKIKPECEFLILASDGLWDKVTNQEAVDVVRPLCIGVDKPEPFSACKNLARLAIRGGSTDDISVMVIQLSHFLS* 375
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0079 374 ProSiteProfiles PPM-type phosphatase domain profile. 118 369 IPR001932 -
Vvi13g0079 374 ProSitePatterns PPM-type phosphatase domain signature. 149 157 IPR000222 GO:0043169
Vvi13g0079 374 SUPERFAMILY PP2C-like 118 370 IPR036457 -
Vvi13g0079 374 SMART PP2C_SIG_2 114 369 IPR001932 -
Vvi13g0079 374 FunFam probable protein phosphatase 2C 25 111 372 - -
Vvi13g0079 374 PANTHER PROTEIN PHOSPHATASE 2C 84 368 IPR015655 GO:0004722|GO:0006470
Vvi13g0079 374 Gene3D - 111 373 IPR036457 -
Vvi13g0079 374 CDD PP2Cc 118 369 IPR001932 -
Vvi13g0079 374 SMART PP2C_4 111 367 IPR001932 -
Vvi13g0079 374 Pfam Protein phosphatase 2C 119 362 IPR001932 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vvi13g0079 Vvi-Chr13 727948 729900 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0079 1 373 PP2C-type Phosphatase Gene Family AT2G30020 58.543 2.11e-135 390
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0079 K17506 - vvi:100248525 676.396