Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0072 ATGCCTCCAGCAAACAGCAACCCAAACCCAAACACAGAGCCATTTGAGACGTTCTTTCGAGGATGGCTGGTCAGGCAAGAGGAAGTCCGCCAGCTACTCCTCCAAGCAACTACTGAGCGCGACTGCGACAAGGCAAGAGAAGACGAGGAGGCAAGGCTGCAAGGGCTGATAGGGAGAGTGGTGGCGCACTATGCTGAGTACTACAAAGCGAAGCTGAGAGTGGTGAGAGAGGACGCGCTGAACATGTTCGAACCACCATGGTTCACTCTCTTCGAGCGAAACCTACTTTGGATCGGTGGGTTCAAGCCAGGGCTCGCGCTTCGGCTGGTGAGGAACTATGTAACGAACCTGACGGAGGAGCAGACGCGGATGATGGAGGATGTGAGGACGGAGATGGCTGAGGAGGAGAGGGAACTGGCTGCGGAGCTGGAGAAGGTGAAGACGGGGCCCACAATGATATCGCTCGTGGAGATGGCGACAAGGGGGAGAGAGCGGTCGAATGGAGAAAGGGACGAGGTGGATGAGCAAATTGAGATAGTGAAGTTAGCAGTGGAGACGCTTGTGGAGTGTGCTGATTATCTGAGATGCAAAACTGCCCTTAAGATCATGGACATACTCAACCCTTCTCAGAATTTGAAGTTCTTGCTGGCCATAACTCAGCTTCAGCTCCGAGTTTGCAACTGGGGATTGCAGAGAGAAGCTGAGAGCCGCAATGACAATGGCCGCCACTAG 732 0.541 MPPANSNPNPNTEPFETFFRGWLVRQEEVRQLLLQATTERDCDKAREDEEARLQGLIGRVVAHYAEYYKAKLRVVREDALNMFEPPWFTLFERNLLWIGGFKPGLALRLVRNYVTNLTEEQTRMMEDVRTEMAEEERELAAELEKVKTGPTMISLVEMATRGRERSNGERDEVDEQIEIVKLAVETLVECADYLRCKTALKIMDILNPSQNLKFLLAITQLQLRVCNWGLQREAESRNDNGRH* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0072 243 ProSiteProfiles DOG1 domain profile. 12 235 IPR025422 GO:0006351|GO:0043565
Vvi13g0072 243 PANTHER DOG1 DOMAIN-CONTAINING PROTEIN 13 239 - -
Vvi13g0072 243 Coils Coil 118 145 - -
Vvi13g0072 243 Pfam Seed dormancy control 41 111 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0072 Vvi-Chr13 652068 652799 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0072 1 218 Calmodulin-binding Proteins AT1G22070 27.313 6.52e-14 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0072 - - vvi:100251914 464.922