Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0070 ATGCCTCTAGCGAACAACAACCCTAACCCAAACCCTGAGCCATTTGAGAGGTTCTTTCGAGGATGGCTGGTCAGGCAAGAGGAAGTCCGCCGGCTACTCCACCAAGCAAATGAGTTCCACTGCAACCAGGCAAGAGAAGGCGATGAAGCGAGGCTGCAAGAGCTGATAGGGAGAGTGCTGGCGCACTACGCGGAGTACTACGAAGCCAAGCAGAGAGTGGTGCGAGAGGACGTGCTGATCTTGTTCGGACCGCCATGGCTCACTCCCTTCGAGCGAAGCCTCCTCTGGATTGGTGGGTTGGGGTTCTAA 309 0.5631 MPLANNNPNPNPEPFERFFRGWLVRQEEVRRLLHQANEFHCNQAREGDEARLQELIGRVLAHYAEYYEAKQRVVREDVLILFGPPWLTPFERSLLWIGGLGF* 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0070 102 PANTHER DOG1 DOMAIN-CONTAINING PROTEIN 13 99 - -
Vvi13g0070 102 ProSiteProfiles DOG1 domain profile. 12 102 IPR025422 GO:0006351|GO:0043565
Vvi13g0070 102 Pfam Seed dormancy control 40 100 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0070 Vvi-Chr13 648234 648542 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0070 1 100 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT5G06839 32.000 1.25e-08 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0070 - - vvi:109123648 201.06