Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0064 ATGAAAAGCTCACCTCTTGTAAGCAAATTGGAGGGTTACATGTGCAGTGGTTCAAAGAGTAAACTCTGCCCATTCAATATGGTGATGGAGGGAAAATCTCCAAACCAGGCAGATGGGATTTCCTCTAAATGCTCAGTTTTGCTTGAATTATCAGCTTCTGACGATCTCAAGAGCTTCAGATGCGAAGTAGAAGAGAAGGGCATGGAAGTTGACAAGCCAGGCTTTTGGTATGGAAGGAGACTTGGGTCGAAAAAGATGGGGTTCGAGGAGAGAACTCCTCTTTCAATTGCTGCCATGTTTGGCAGCACCGAGGTGTTGAAGTATATAATCGAAACCGGCAAGGTTGATGTCAACAGGGCTTGCGGTTCGGACCAGGTGACTGCCCTTCACTGCGCTGCCGCGGGTGGGTCGGTCTCTTCCCTTGAGGTTGTCAAGCTCTTGCTTGACGCTTCTGCAGATGCTAATTGTGTTGATTGTAATGGGAATAAGCCTGTGGATATGATTGCCCCTGCTTTGAAATCCTCCTGTAATTCAAGGAGGAGAGCTACGGAGATGTTGCTGAGAGGTGACCAGGTGATTGAGCTAGAGGAAGAACAGCAGCCATCCACAGCTCCACAGCTATCCAAAGAAGGAAGCGAGAAGAAAGAGTATCCTATCGATATATCGCTGCCGGACATAAACAATGGGATATATGGAACAGATGAGTTCAGGATGTATACTTTCAAGGTGAAGCCTTGCTCCAGGGCTTACTCCCATGACTGGACGGAGTGCCCATTTGTCCATCCAGGGGAGAACGCCAGGAGGAGAGACCCGAAGAAGTTCCCCTACAGCTGTGTTCCCTGCCCGGAGTACCGCAAGGGTTCTTGCCAGAAGGGGGATTCTTGTGAGTATGCTCATGGTGTGTTCGAGTGCTGGCTCCATCCCGCCCAGTACCGAACCCGGCTCTGCAAGGATGAAACTGGGTGTAGTAGGAAAGTTTGTTTCTTCGCCCACAGGCCTGAAGAATTGCGGCCTTTGTATGCTTCCACAGGCTCAGCCATGCCTTCACCAAGGTCTCTTTCAGCTTCTGCAGTGGACATGGCGACACTGAGTCCATTGACCCTTGGTTCATCTGCCTTGCTACTGCCGCCTACTTCGTCGTCTTTGCTGTTGCCTCCCACCTCAACACCGCCCATGTCTCCATCTGCGGTCTCTTCATCGCCGAAGAGCTCCGGTATGTGGCAGAACAAGGTTAACTTCACCCCACCTAGCCTGCAGCTACCGGGTAGCAGGCTGAAGTCTGCTTTGAGTGCTAGAGATTTGGAGTTGGAGTTGGAGCTGCTGGAGCTGGAAAGTCAGCTTACCCACAAGCAATTGATGGATGAGATGTCTAGTCTCTCCTCTCCATCCTGCTGGAATAAGGAATTCAGTAGGATCGGAGAACTGAAGCCTACTAATCTTGATGATATGTTTGGATCTTTTGATCCTTCGGTATTGTCTCAGTTGCAGGGACTCTCACTGAAAGCCACAACCCCCCAGCTGCAATCTCCTCAATTGCAATCCCCAACTGGGCTTCAGATGCGGCAGAACATGAACCAACAGCGGGCGAGCTACCCGACCAAGACCACTGTCACCTCCTCTCCAGTGAGGAAAACCTCCTCATATGGGTTTGATTCATCAGCTGCAGTAGCAGCAGCAGTGATGAATTCAAGGTCTTCTGCTTTCGCAAAGCGCAGCCAGAGCTTCATCGATAGGGGAGGTATGAGCCATCGCTCACCTGGGTTCACTGCAGCTTCTAATTCTGCAACCTTGATGTCATCCAATCTTTCTGACTGGAGCTCCCCTGATGGGAAACTGGATTGGGGCATTCAAGGAGATGAACTCAACAAGCTGAAGAAGTCTGCCTCTTTCGGATTCCGAACCAACAACACTGCAACAGCAACACAATCCATGATGGCCTCAACTGATGAACCAGATGTATCTTGGGTTAATTCCCTAGTCAAGGATGTTCCTGCTGTCTCATCTGGGCTGTTTGGTTCCCAGCAACGGCCATACGGCATTGGGGTTCATGAGAAGCTCCCTCCATGGGTGGAGCAAATGTACATAGAACAGGAGCAGATGGTGGCTTAA 2109 0.504 MKSSPLVSKLEGYMCSGSKSKLCPFNMVMEGKSPNQADGISSKCSVLLELSASDDLKSFRCEVEEKGMEVDKPGFWYGRRLGSKKMGFEERTPLSIAAMFGSTEVLKYIIETGKVDVNRACGSDQVTALHCAAAGGSVSSLEVVKLLLDASADANCVDCNGNKPVDMIAPALKSSCNSRRRATEMLLRGDQVIELEEEQQPSTAPQLSKEGSEKKEYPIDISLPDINNGIYGTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPKKFPYSCVPCPEYRKGSCQKGDSCEYAHGVFECWLHPAQYRTRLCKDETGCSRKVCFFAHRPEELRPLYASTGSAMPSPRSLSASAVDMATLSPLTLGSSALLLPPTSSSLLLPPTSTPPMSPSAVSSSPKSSGMWQNKVNFTPPSLQLPGSRLKSALSARDLELELELLELESQLTHKQLMDEMSSLSSPSCWNKEFSRIGELKPTNLDDMFGSFDPSVLSQLQGLSLKATTPQLQSPQLQSPTGLQMRQNMNQQRASYPTKTTVTSSPVRKTSSYGFDSSAAVAAAVMNSRSSAFAKRSQSFIDRGGMSHRSPGFTAASNSATLMSSNLSDWSSPDGKLDWGIQGDELNKLKKSASFGFRTNNTATATQSMMASTDEPDVSWVNSLVKDVPAVSSGLFGSQQRPYGIGVHEKLPPWVEQMYIEQEQMVA* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0064 702 Gene3D - 85 219 IPR036770 -
Vvi13g0064 702 ProSiteProfiles Ankyrin repeat region circular profile. 89 113 - -
Vvi13g0064 702 Pfam Ankyrin repeats (3 copies) 87 157 IPR002110 GO:0005515
Vvi13g0064 702 Coils Coil 431 451 - -
Vvi13g0064 702 PANTHER UNKEMPT FAMILY MEMBER 49 663 IPR045234 -
Vvi13g0064 702 Gene3D - 276 338 - -
Vvi13g0064 702 FunFam Zinc finger CCCH domain-containing protein 66 233 301 - -
Vvi13g0064 702 ProSiteProfiles Zinc finger C3H1-type profile. 275 302 IPR000571 GO:0046872
Vvi13g0064 702 MobiDBLite consensus disorder prediction 194 214 - -
Vvi13g0064 702 ProSiteProfiles Ankyrin repeat region circular profile. 124 158 - -
Vvi13g0064 702 ProSiteProfiles Ankyrin repeat profile. 124 159 IPR002110 GO:0005515
Vvi13g0064 702 SMART c3hfinal6 310 333 IPR000571 GO:0046872
Vvi13g0064 702 SMART c3hfinal6 275 301 IPR000571 GO:0046872
Vvi13g0064 702 SMART ANK_2a 89 119 IPR002110 GO:0005515
Vvi13g0064 702 SMART ANK_2a 124 156 IPR002110 GO:0005515
Vvi13g0064 702 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 280 300 IPR000571 GO:0046872
Vvi13g0064 702 SUPERFAMILY Ankyrin repeat 86 166 IPR036770 -
Vvi13g0064 702 ProSiteProfiles Ankyrin repeat profile. 89 113 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0064 Vvi-Chr13 604163 606470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0064 45 697 C2H2 Transcription Factor Family AT5G12850 40.470 1.23e-147 445
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vvi13g0064 Ank_4 3.9e-09 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0064 - - vvi:100246707 1269.99