Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0062 ATGGCTTCCATCGACTCCAGTCCTCGCACCGTTGAAGACATTTTCAAGGACTACAAAGCTCGACGCAGCGGCGTAGTTCAAGCTCTCACCTTCGATGTCGACGAATTCTACGCGCTATGCGATCCAGAGAAGGAGAATTTGTGTTTGTACGGACATCCGAATGGGTCATGGCATGTGGCTATGCCAGCGGAGGAAGTTCCGCCTGAGCTGCCGGAGCCGGCTTTAGGGATTAATTTTGCAAGAGATGGGATGAACCGGAGAGACTGGCTTGCGTTAGTTGCTGTGCATAGTGATTCTTGGTTGCTTTCTGTGGCATTTTATTTTGGTGCTAGCCTTAACCGTAACGACAGGAAGCGGCTATTTAGCATGATAAACGATCTGCCCACTGTCTTTGAAGCTGTAACCCAAGGAAAACTTGTCAAAGACAAACCCACTATGGATAGTGGAAGCAAATCGAAGAGTAGCACGAAGAGATCAATTGATGGCCAGGTGAGAAATGACCTAAGGCCACGAGATGAGGGCTATGTGGAGGATGACGATGAACACAGTGAAACCCTTTGTGGTAGCTGTGGGGGAAATTACAATGCTGATGAGTTCTGGATCGGCTGTGACATCTGTGAGAGGTGGTTCCATGGAAAGTGCGTGAAGATAACACCAGCCAAGGCTGAAAGTATCAAGCAGTATAAATGCCCTTCTTGCAGCTTGAAGAAGGGCAGGCTGAACTAA 726 0.4848 MASIDSSPRTVEDIFKDYKARRSGVVQALTFDVDEFYALCDPEKENLCLYGHPNGSWHVAMPAEEVPPELPEPALGINFARDGMNRRDWLALVAVHSDSWLLSVAFYFGASLNRNDRKRLFSMINDLPTVFEAVTQGKLVKDKPTMDSGSKSKSSTKRSIDGQVRNDLRPRDEGYVEDDDEHSETLCGSCGGNYNADEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSCSLKKGRLN* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0062 241 PANTHER CPG BINDING PROTEIN 7 239 IPR045104 GO:0006355|GO:0042393
Vvi13g0062 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 234 IPR013083 -
Vvi13g0062 241 ProSitePatterns Zinc finger PHD-type signature. 187 233 IPR019786 -
Vvi13g0062 241 MobiDBLite consensus disorder prediction 142 183 - -
Vvi13g0062 241 MobiDBLite consensus disorder prediction 158 183 - -
Vvi13g0062 241 SMART PHD_3 186 234 IPR001965 -
Vvi13g0062 241 FunFam PHD finger alfin-like protein 179 235 - -
Vvi13g0062 241 ProSiteProfiles Zinc finger PHD-type profile. 184 236 IPR019787 -
Vvi13g0062 241 CDD PHD_AL_plant 186 236 IPR044104 -
Vvi13g0062 241 Pfam Alfin 10 135 IPR021998 GO:0006355|GO:0042393
Vvi13g0062 241 Pfam PHD-finger 187 234 IPR019787 -
Vvi13g0062 241 SUPERFAMILY FYVE/PHD zinc finger 177 238 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0062 Vvi-Chr13 571541 576163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0062 1 239 Alfin-like Transcription Factor Family AT5G05610 72.917 1.78e-116 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Vvi13g0062 Alfin 1.6e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0062 - - vvi:100251933 496.893