Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0060 ATGCAAAATGACCTCTACTGGTACGATGAGAAAGACGATGACTACTTCAATACCTCCTGCTTTGGAGGGTCAGAGTCCTTTGGTTGCCCAAGTGAGGACAAGTTTGTCATGACTTTGGAGAAAGATAAGCAGTCTGAAAGCCAATTGACGTTAATTCATAAATCTGAAGGATACCCAACATTACCAACTACTAATTACCTGGAAAAGCCATGTGTTTTCAATCTTACTTCTATGGATGGTGTGAATGACATTCCAGTGACCGATTATTATCATTTGGGTGAGCATTTCCAACCAGACGGGGCCAGAGAAGGAGATCATGAGAGCTGTGCAGTTTATAGCTGTTCAGTCCCCCTTTGCAAATGCTGTGCTGGTGCCGAAGGGTTTCGTGGTGGTGATCCTGTAGATTATAGCCAAATGAACTTTGCCGAGACTGATTTGGATGGTTCTCAGTTAAAGGTTGTAGGGAAAATACCAACTGACTGCGATTCGGCTTCAGAATATAAAATAAACAAGAGCTTTGACTACTCTATTAAAAGGAGTTCTGCTAATGATTTGATTGGAGAGTTTAAAAGTACCTCTGACTTACATATTGAAAACACCGAGCCAAATGGAAACTATGGCTATGAAGTTGGAGATGATGGAGAAGTGGCTGGAGAATGCTATGAGCCTGAGGCTAATGTTGATGACCAGGAAGGTGCTACTGCTGATGAGCTTTTGATGTATGAAAACCAAGAGGATGAATATGAAGTATTCAATCTAAGAATCATACACAGGAAAAACAGGACTGGATTTGAAGAGAACAAGGATCTACCTATTGTTCTAAATACTGTCCTTGCCGGCAGATATTACATCACAGAATACCTAGGTTCAGCCGCTTTCAGCAAAGTTGTTCAAGCACATGATCTCCAGACAGGAATGGATGTTTGCCTGAAGATCATAAAAAATGACAAGGACTTTTTCGATCAGAGTTTAGATGAAATTAAACTTCTAAAATATGTGAACAAGCATGATCCTGCTGATGAACGCCACATTTTGCGCCTTTATGACTACTTCTATCATCAGGAGCATCTTTTCATTGTTTGTGAACTCCTTCGGGCAAACTTATATGAATTTCAGAAATTTAATCAAGAATCTGGTGGAGAGACTTATTTTACTTTGAAGAGGTTGCAGGTTATAACCCGGCAGTGTTTGGAGGCACTGGAATACTTGCATGACTTGGGAATTATCCACTGTGATCTAAAGCCTGAGAACATTCTTATCAAAAGTTACAGGAGATGTGACATAAAGGTTATTGATCTTGGAAGCAGTTGCTTTCGGACAGATAACTTGTCCCTCTATGTACAATCCCGTTCCTACAGGGCTCCTGAAGTCATCCTAGGCCTCCCATATGATCAAAGAATTGACATTTGGTCTCTTGGTTGCATCTTGGCCGAGCTCTGCTCTGGGGAGGTGCTTTTTCCGAATGATGAACTTGTAACATTGCTTGTGCGCATGATTGGGATGCTTGGTCCTATCGATCTGGAGATGTTAGTAAGGGGGCAGGAGACTTACAAGTACTTCACAAAAGAATATGACCTTTATCATATAAATGAGGAAACAAACGAAATGGAATACTTAATCCCTGAGGAATCCTCATTGGAGGATCACCTGCAGATATCTGATGTTGGATTTCTCAACTTCTTGAGAGACTTGCTTGAGATAAACCCCCAGAGGCGTCCCACTGCAAAAGAGGCGCTAGACCACCCCTGGCTATCTCATTCATACGACTCCAATTCCAGCCGAGTTTCAGATGGAATCTAA 1800 0.4161 MQNDLYWYDEKDDDYFNTSCFGGSESFGCPSEDKFVMTLEKDKQSESQLTLIHKSEGYPTLPTTNYLEKPCVFNLTSMDGVNDIPVTDYYHLGEHFQPDGAREGDHESCAVYSCSVPLCKCCAGAEGFRGGDPVDYSQMNFAETDLDGSQLKVVGKIPTDCDSASEYKINKSFDYSIKRSSANDLIGEFKSTSDLHIENTEPNGNYGYEVGDDGEVAGECYEPEANVDDQEGATADELLMYENQEDEYEVFNLRIIHRKNRTGFEENKDLPIVLNTVLAGRYYITEYLGSAAFSKVVQAHDLQTGMDVCLKIIKNDKDFFDQSLDEIKLLKYVNKHDPADERHILRLYDYFYHQEHLFIVCELLRANLYEFQKFNQESGGETYFTLKRLQVITRQCLEALEYLHDLGIIHCDLKPENILIKSYRRCDIKVIDLGSSCFRTDNLSLYVQSRSYRAPEVILGLPYDQRIDIWSLGCILAELCSGEVLFPNDELVTLLVRMIGMLGPIDLEMLVRGQETYKYFTKEYDLYHINEETNEMEYLIPEESSLEDHLQISDVGFLNFLRDLLEINPQRRPTAKEALDHPWLSHSYDSNSSRVSDGI* 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0060 599 Gene3D Transferase(Phosphotransferase) domain 1 336 584 - -
Vvi13g0060 599 PANTHER DUAL SPECIFICITY PROTEIN KINASE 188 585 - -
Vvi13g0060 599 FunFam Putative serine/threonine-protein kinase dyrk2 276 363 - -
Vvi13g0060 599 Pfam Protein kinase domain 284 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g0060 599 ProSitePatterns Serine/Threonine protein kinases active-site signature. 408 420 IPR008271 GO:0004672|GO:0006468
Vvi13g0060 599 CDD PKc_DYRK_like 282 584 - -
Vvi13g0060 599 ProSiteProfiles Protein kinase domain profile. 282 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g0060 599 Gene3D Phosphorylase Kinase; domain 1 277 363 - -
Vvi13g0060 599 FunFam Serine/threonine-protein kinase ppk15 361 585 - -
Vvi13g0060 599 SUPERFAMILY Protein kinase-like (PK-like) 271 589 IPR011009 -
Vvi13g0060 599 SMART serkin_6 282 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0060 Vvi-Chr13 541108 545468 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0060 279 579 MAP Kinase Gene Family AT5G19010 32.087 2.43e-32 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Vvi13g0060 Pkinase 1.1e-51 CL0016