Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0058 ATGACACCCCTCTCCGTCGCCGTCGCAGCAGTCGTCACCGTTGTCATCGCTGCGGTTTCTTCTCCGGCGCTGGTTCATGGGCTGGGCTCGGGCTCCACTCTCGCCGTCAGCTACGGCTCGGGGGCGGTCTGCGGCGTCGTGGCCGGGGAGCGGTACCAGAGAATCGAGTGTTACCGGGGCGGCGAAACCATCTCCATCGAGCCCAACATTTCCTCCTTCTCGTCCATCTCCGGCGGCCGGGACTTCTTCTGCGGCCTGAGGTCCGGGGGTTTCGCCCTGTTCTGCTGGAACACTAGCTTCGTGGCGAAAAGAATTTACTTCAATTACACAGTTCTGCTGGAGAATCTCGCAGTGGGTGACGATCAGGTGTGCGCGACGGTAAACGGTACCGGAGTTGTGAAGTGCTGGAGAGGTGAAAACTCGAGTTCCCTGTCTGAGTCCAGTCAATTTTCTTCAATTTCATCTGGGTTAGGATTTTCCTGCGGTATTTTGGTTAATAATAGAACCGTTCAATGTTGGGGAAGTAACACAATTGCGAATCAAATTCAACAAGAGTTTGGAAATACTCCGATGTTGAGTATTATGGCGGGCGGTTCACACGTTTGTGGATTGAACACAACTGGGTATTTGTTGTGTGAAGGGAGTAACGATTCAGGGCAGTTGAATGTTCCTTCTGGTTCAGCTTATGAGTTTTCGAATCTGTCGCTTGGAGAGAATCATAGTTGTGCCATTCGGCAATCTAATGGATCAGTTGTGTGTTGGGGTGGTGGAGGAGAGTTCTCAACCAATGCAACTAATGGTATTTCTTTTGAATCCATTGTTTCTGGATTGAATTTTACTTGTGGATTGATAACAACTAATTATTCAATAATTTGTTGGGGTCCTGGATGGCCTAGTAGCTCTGTTTCTGGGCTTGGATTGAGCCCTCTGCCTTTATCCATCATTCTTCCAGGACCCTGCGTTCAGTCTTCTTCTTGTGAGTGTGTCTATCCTGGGTCTCAATACCTCTGTTACGGTTCTGAGGTTGTTTGCAAGCCTTGTAGAGTTTTGGTACCAGGGTCGCCGGTGCCATTATCACCGGTGTCACCGCCGTCAGTTTCTCCACCGTCGTCTCCGTCCAGGGCTTTATCAAGGGGTTTATTAGCTTTTGCCATTGTTGGATCAGTCGGGGCCTTTTCGGGCATTTGCACCATAATTTACTGCTTGTGGACTGGAGTTTGTTGTGGGCACAAGAAAATCCACAACTCTGTGCAGCCAACAATTGCTCGAGGCAATTCTAATGGTGGTGCAAACTCAAATAGTAGCCCCCCTTCAAGATCTTTGACCATAAGGCGCCAGAGCTCGCGGGCAATGAGGCGTCAGAGGAGTGGGACTTCATCAAAACACACAGACAGGGCAGAGGAGTTTGCTCTCTCAGAGCTTGCAGCAGCCACCGATAATTTCTCCCTGGAGAACAAGATTGGAGCAGGCAGCTTTGGGGTTGTGTACAAGGGAAAATTACCTGATGGTCGTGAGGTTGCGATCAAGAGAGGCGAGACTGGTCTAAAGACCAAGAAGTTTCAAGAGAAGGAGAGTGCATTTGACTCTGAATTGGCCTTCTTATCGCGGCTTCACCACAAACATTTGGTCAGGCTTGTTGGGTTTTGCCAAGAAATGGATGAAAGGCTTTTGGTGTATGAGTACATGAAAAATGGTGCGCTCTATGATCATTTACATGACAAAAACAATATCGAAAAGAGTAGTAATGTGTTGAATTCATGGAAGTTGAGGATCAGAATCTCATTAGATGCTGCAAGGGGGATAGAATACCTTCATAACTATGCAGTCCCGCCTATAATTCACAGAGACATCAAGTCCTCCAACATTCTGCTCGATGCCAATTGGACTGCTAGAGTGTCTGATTTTGGGTTGTCACTGATGGGGCCAGACTCCAGCCATAGTTTCAGGCCGATGAAGGCAGCTGGAACAGTTGGTTACATTGATCCTGAGTACTATGGACTAAATGTATTAACAGCAAAGAGCGATGTCTATGGGCTTGGAGTTGTTTTGCTGGAGCTTTTGACAGGGAAGAGAGCGATATTCAAGGATGGTGAAAATGGGGGGACTCCCATTAGTGTGGTGGACTTTGCAGTGCCGGCAATTATTGCCGGAGAACTGATGAAGGTCTTGGATCCGAGGGTTGGGCCACCGCAGACGAATGAAGCGGAGGCGGTTGAGCTGGTGGCTTACACTGCAATGCATTGTGTGAACTTGGAGGGGAAGGAAAGGCCAACCATGGCTGACATTGTAGCTAATTTGGAACGTGCATTGGCTCTCTGTGAAGACAGCCATGGCAGCATCTCTAGTGGCACAATTTCCATTGTTTCAGATTGA 2373 0.4871 MTPLSVAVAAVVTVVIAAVSSPALVHGLGSGSTLAVSYGSGAVCGVVAGERYQRIECYRGGETISIEPNISSFSSISGGRDFFCGLRSGGFALFCWNTSFVAKRIYFNYTVLLENLAVGDDQVCATVNGTGVVKCWRGENSSSLSESSQFSSISSGLGFSCGILVNNRTVQCWGSNTIANQIQQEFGNTPMLSIMAGGSHVCGLNTTGYLLCEGSNDSGQLNVPSGSAYEFSNLSLGENHSCAIRQSNGSVVCWGGGGEFSTNATNGISFESIVSGLNFTCGLITTNYSIICWGPGWPSSSVSGLGLSPLPLSIILPGPCVQSSSCECVYPGSQYLCYGSEVVCKPCRVLVPGSPVPLSPVSPPSVSPPSSPSRALSRGLLAFAIVGSVGAFSGICTIIYCLWTGVCCGHKKIHNSVQPTIARGNSNGGANSNSSPPSRSLTIRRQSSRAMRRQRSGTSSKHTDRAEEFALSELAAATDNFSLENKIGAGSFGVVYKGKLPDGREVAIKRGETGLKTKKFQEKESAFDSELAFLSRLHHKHLVRLVGFCQEMDERLLVYEYMKNGALYDHLHDKNNIEKSSNVLNSWKLRIRISLDAARGIEYLHNYAVPPIIHRDIKSSNILLDANWTARVSDFGLSLMGPDSSHSFRPMKAAGTVGYIDPEYYGLNVLTAKSDVYGLGVVLLELLTGKRAIFKDGENGGTPISVVDFAVPAIIAGELMKVLDPRVGPPQTNEAEAVELVAYTAMHCVNLEGKERPTMADIVANLERALALCEDSHGSISSGTISIVSD* 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0058 790 MobiDBLite consensus disorder prediction 422 445 - -
Vvi13g0058 790 Gene3D Transferase(Phosphotransferase) domain 1 562 780 - -
Vvi13g0058 790 MobiDBLite consensus disorder prediction 422 465 - -
Vvi13g0058 790 ProSitePatterns Protein kinases ATP-binding region signature. 487 509 IPR017441 GO:0005524
Vvi13g0058 790 SMART serkin_6 481 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g0058 790 ProSitePatterns Serine/Threonine protein kinases active-site signature. 612 624 IPR008271 GO:0004672|GO:0006468
Vvi13g0058 790 FunFam serine/threonine-protein kinase-like protein CCR1 450 561 - -
Vvi13g0058 790 SUPERFAMILY RCC1/BLIP-II 31 259 IPR009091 -
Vvi13g0058 790 SUPERFAMILY Protein kinase-like (PK-like) 461 766 IPR011009 -
Vvi13g0058 790 Pfam Protein kinase domain 482 763 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g0058 790 ProSiteProfiles Protein kinase domain profile. 481 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g0058 790 Gene3D - 20 185 IPR009091 -
Vvi13g0058 790 Gene3D - 186 307 IPR009091 -
Vvi13g0058 790 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 188 776 IPR044815 GO:0004674
Vvi13g0058 790 FunFam Serine/threonine-protein kinase-like protein CCR4 562 783 - -
Vvi13g0058 790 Gene3D Phosphorylase Kinase; domain 1 442 561 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0058 Vvi-Chr13 525665 528037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0058 4 790 Receptor kinase-like Gene Family AT3G55950 63.004 0.0 906
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Vvi13g0058 Pkinase 1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0058 - - vvi:100243297 1386.32