Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0057 ATGGCTTCAAGGACCCACCAACCACCGCCACTCTCTCTCTCGTCGGATTCAGATACCGATTCCGAGGGAAATTCCGGCGGAGTAGAGACTCTCCGGCACGGTGACCTCTCGGACTCTATCTTCAAATCCTACATTCAGATCACAGGTCGTTCATCGCCTGATCTCTCGAAAATCCAATCTTTCCTCACATCATCGCGCTCCGGGGCTCTGTCATGCCTAATTTGCCTGGAGCGGATCCGGCCGTCTGATCCCACCTGGTCTTGCACCTCCGGCTGCTTTGCCGTCTTCCACCTCATCTGCATCCAAAGCTGGGCCCGCCAAGCCTCCGACCTCTCCGCTTCACGCGCCACTGCACGCCTGTCCGCCGATCTCTTCCCCGCCGCAGCAGCAAAGGCCATTGAAGACGCCGCCTGGCACTGCCCCAAGTGCCGATTCGAGTATTCTAAGGCCCTAATCCCCAAAGCTTACTTCTGTTTTTGTGGTAAATTACAAGACCCACCGAGGGACCCGTGGATCTTACCGCATTCATGCGGCGAAATATGTAATCGCCCACTGAAGAACAATTGTGGTCACTATTGTTTGCTGCTCTGCCACCCTGGCCCCTGTCCATCCTGCCCAAAACTTGTACAAGCTCGTTGTTTTTGTGGGTCTGTCGAAGATGTTCAGCGATGTGGGTTCAAGAAATTTTCGTGTAAGAATATTTGTTCCAAGTTATTGGATTGTGGGATTCACCGGTGTTCGGATACTTGTCATGATGGCCCTTGCCCTCCTTGTCAAGCTCGCAGTGTTTATCGGTGTCAATGTGGAGAGATAGAAGAAGAGAGGGAGTGCTGCGATCGGGTCTTTCGGTGTGAGGTCCCGTGTGGGAGAGTGCTTGGGTGTGGGAAGCATGCGTGCAGTAAAGGTTGTCATTCGGGTGAGTGTGGCCAGTGCCCACTTCAGGGAAGGAGGACATGCCCTTGTGGGAAGAGGGTGTATGAAGGGATGGCTTGTGATGTCTCGGTGCCACTCTGTGGAGCCACTTGTGATAAGATGTTGAGCTGCGGGTTTCATAGTTGCCCGGAGCGATGCCATAGAGGCCAATGCATTGAGACTTGCAGGACTGTTGTCATTAAAGGATGTCGGTGTGGGAGCTTGAAGAAAGAGGTTCCTTGCTATCAAGATTTGGCATGTGAAAGGAAATGTCAGAAAGTACGAGATTGCGGACGCCATGCTTGTAAACGCCGATGCTGTGATGGGGATTGCCCACCATGCTCTGAGATTTGTGGCAAGAGGCTTAGATGTAAGAACCACAAGTGCCCTTCTCCATGCCATAGAGGTCCCTGCGCTCCTTGCCCTGTCATGGTGACAATTTCATGTTCGTGTGGTGAGACACATTTTGAGGTTCCTTGTGGTACTGAAACAGAACAGAAGCCTCCAAAATGTTCCAAGTTATGTCACATAACTCCTTTATGCAAACATGGATCAGATTGTAAGCCACATCGATGCCATTATGGAGCTTGCCCCCCATGTCGACTGCTATGTGAAGAAGAATTCCCATGTGGCCATAAGTGCAAGCTCAGGTGTCATGGCCCTAAACCACCACCTAATCCTGAATTCACATTGAAACCTAAGAAAAGGAAGTCAAATCATCAGGCTGAAGGGACTCCTGGTTCACCATGTCCTCCTTGCTCAGAACTCCTTTGGAGGTCTTGTGTTGGCCAACACATTGGCACAGAGAGAATGATGGTCTGCTCGGATAGAAAAAAATTTTCTTGTGAAAATTTGTGTGGGAATCTTCTTCCTTGTGGCAATCACTATTGTACTAAAACTTGCCATGCCCTGATGAGCCAGTTTTTAACATCAGTTCAGAATCAAAGAGGCGAGTCCTGCGAAGATTGCCATCTACCTTGTGAAAAGGAGAGGAGGCCCAAATGCCCACATCCTTGTCCATCACCATGTCATCCAGGAGAATGTGCCCCTTGCAAAGTGCTTATAAAAAGATCATGTCATTGTGGTTCCATGGTCCATGTTTTTGAGTGCTTGTATTTCAACAGCTTGTCAGAAAAGGAGCAAATGACTATTCGGTCTTGTGGTGGACCCTGCCATAGAAAGTTACCCAACTGTACACATCTCTGCCCAGAGACTTGCCATCCTGGTCAATGCCCATCACCTGATAAGTGCTCTAAAAAGGTAACTGTTCGCTGTGGATGTCAGACCTTGAAAAAGGAATGGCTATGTCATGATGTTCAAGCAGCCTATCTCAATGTTAGTTGTGATCCAAAAGATGTATCTAAAAATCAATTTGGACTTGGACTTCTTCCTTGCAATTCAGAGTGTAAGAGTAAAGTGAAGGTGGTTGATTCAGAATTACAATTACGTAAACCAAAAGTTGTGGAGCGGAAGGAGCCACATGTCGAAAAGCATGTACCAAAGCGTAGAAAAAGACGGGAACGGGTACAAGAAGTGCAGCAAATCTCTAGACTGCAGAAAATTATTTCCACCACATGGAGGCTTCTTCTGTATTTCACCTTTTTGATGGTTCTGATAGCAGTGACATATTATGGTTACAAGGGTCTCTTGTGGCTCTCTGACTGGATGAATGAAGTTGAAGAGAAAAGAGAAAGAAGAAGATACCCGCAAATCTGA 2628 0.4821 MASRTHQPPPLSLSSDSDTDSEGNSGGVETLRHGDLSDSIFKSYIQITGRSSPDLSKIQSFLTSSRSGALSCLICLERIRPSDPTWSCTSGCFAVFHLICIQSWARQASDLSASRATARLSADLFPAAAAKAIEDAAWHCPKCRFEYSKALIPKAYFCFCGKLQDPPRDPWILPHSCGEICNRPLKNNCGHYCLLLCHPGPCPSCPKLVQARCFCGSVEDVQRCGFKKFSCKNICSKLLDCGIHRCSDTCHDGPCPPCQARSVYRCQCGEIEEERECCDRVFRCEVPCGRVLGCGKHACSKGCHSGECGQCPLQGRRTCPCGKRVYEGMACDVSVPLCGATCDKMLSCGFHSCPERCHRGQCIETCRTVVIKGCRCGSLKKEVPCYQDLACERKCQKVRDCGRHACKRRCCDGDCPPCSEICGKRLRCKNHKCPSPCHRGPCAPCPVMVTISCSCGETHFEVPCGTETEQKPPKCSKLCHITPLCKHGSDCKPHRCHYGACPPCRLLCEEEFPCGHKCKLRCHGPKPPPNPEFTLKPKKRKSNHQAEGTPGSPCPPCSELLWRSCVGQHIGTERMMVCSDRKKFSCENLCGNLLPCGNHYCTKTCHALMSQFLTSVQNQRGESCEDCHLPCEKERRPKCPHPCPSPCHPGECAPCKVLIKRSCHCGSMVHVFECLYFNSLSEKEQMTIRSCGGPCHRKLPNCTHLCPETCHPGQCPSPDKCSKKVTVRCGCQTLKKEWLCHDVQAAYLNVSCDPKDVSKNQFGLGLLPCNSECKSKVKVVDSELQLRKPKVVERKEPHVEKHVPKRRKRRERVQEVQQISRLQKIISTTWRLLLYFTFLMVLIAVTYYGYKGLLWLSDWMNEVEEKRERRRYPQI* 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0057 875 CDD RING-CH-C4HC3_NFXL1 70 144 - -
Vvi13g0057 875 CDD NF-X1-zinc-finger 284 327 - -
Vvi13g0057 875 CDD NF-X1-zinc-finger 338 387 - -
Vvi13g0057 875 SUPERFAMILY RING/U-box 69 150 - -
Vvi13g0057 875 CDD NF-X1-zinc-finger 231 279 - -
Vvi13g0057 875 MobiDBLite consensus disorder prediction 529 553 - -
Vvi13g0057 875 MobiDBLite consensus disorder prediction 1 32 - -
Vvi13g0057 875 CDD NF-X1-zinc-finger 391 439 - -
Vvi13g0057 875 CDD NF-X1-zinc-finger 177 225 - -
Vvi13g0057 875 Pfam NF-X1 type zinc finger 189 206 IPR000967 GO:0005634|GO:0008270
Vvi13g0057 875 Pfam NF-X1 type zinc finger 241 259 IPR000967 GO:0005634|GO:0008270
Vvi13g0057 875 Pfam NF-X1 type zinc finger 514 523 IPR000967 GO:0005634|GO:0008270
Vvi13g0057 875 Pfam NF-X1 type zinc finger 422 446 IPR000967 GO:0005634|GO:0008270
Vvi13g0057 875 Pfam NF-X1 type zinc finger 348 366 IPR000967 GO:0005634|GO:0008270
Vvi13g0057 875 Pfam NF-X1 type zinc finger 641 656 IPR000967 GO:0005634|GO:0008270
Vvi13g0057 875 Pfam NF-X1 type zinc finger 401 419 IPR000967 GO:0005634|GO:0008270
Vvi13g0057 875 Pfam NF-X1 type zinc finger 596 606 IPR000967 GO:0005634|GO:0008270
Vvi13g0057 875 Pfam NF-X1 type zinc finger 294 312 IPR000967 GO:0005634|GO:0008270
Vvi13g0057 875 Pfam NF-X1 type zinc finger 495 505 IPR000967 GO:0005634|GO:0008270
Vvi13g0057 875 MobiDBLite consensus disorder prediction 1 26 - -
Vvi13g0057 875 SMART znfxneu3 294 313 IPR000967 GO:0005634|GO:0008270
Vvi13g0057 875 SMART znfxneu3 491 506 IPR000967 GO:0005634|GO:0008270
Vvi13g0057 875 SMART znfxneu3 514 559 IPR000967 GO:0005634|GO:0008270
Vvi13g0057 875 SMART znfxneu3 401 420 IPR000967 GO:0005634|GO:0008270
Vvi13g0057 875 SMART znfxneu3 348 368 IPR000967 GO:0005634|GO:0008270
Vvi13g0057 875 SMART znfxneu3 241 260 IPR000967 GO:0005634|GO:0008270
Vvi13g0057 875 SMART znfxneu3 189 207 IPR000967 GO:0005634|GO:0008270
Vvi13g0057 875 SMART znfxneu3 428 447 IPR000967 GO:0005634|GO:0008270
Vvi13g0057 875 SMART znfxneu3 596 629 IPR000967 GO:0005634|GO:0008270
Vvi13g0057 875 SMART znfxneu3 639 657 IPR000967 GO:0005634|GO:0008270
Vvi13g0057 875 SMART znfxneu3 702 723 IPR000967 GO:0005634|GO:0008270
Vvi13g0057 875 CDD NF-X1-zinc-finger 418 466 - -
Vvi13g0057 875 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 52 523 IPR034078 GO:0003700
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Vvi13g0057 zf-NF-X1 0.003 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0057 K15683 - vvi:100260296 1892.09