Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0054 ATGGCGGCGACAAGACGGTTGATTGCAGTGGCTGTTATATGGATTATGGTTCTGATTGGAACCCTAGCAATCATTCAGAGTCAATTGAGTGCCACAGTCTCAATTGAGCAGAAGACTATCAATACCACGCTTGAAAAGGAAAGCAAGTCAAAGGAGGATTTAGATGGAGTGACACACAAAGTCTATTTTGATGTCGAAGTGAGCGGAAAACCCATTGGCCGCATTACCATGGGTCTCTTTGGGAAAACAGTTCCTAAAACCATAGAAAACTTCCGGGCGCTTTGCACGGGGGAGAAGGGGAGGGGAAAGAGTGGGAAACCTCTTCATTACAAAGGGAGCGCATTCCATAGGATTATTCCCAGCTTTATGATCCAGGGAGGTGATTTTACCCTGGGTGATGGACGAGGTGGAGAGTCAATCTATGGTGAGAGGTTTGCTGATGAGAACTTTAAACTGAATCACACTAGTCCAGGACTTGTGTCAATGGCAAATGCTGGGCCCGACTCCAATGGATCGCAATTCTTCATTACAACAGTAGCAACTCATTGGTTGGATGGCAAACATGTTGTGTTTGGCAAGGTGCTTTCCGGGATGGAGGTGGTCTACAAAATTGAAGAGCTGGGAAGTAGGAATGGGGCGCCCACTCAAAAAGTTGTCATTTCAGACAGTGGTGAACTGCCTCTATAA 687 0.4629 MAATRRLIAVAVIWIMVLIGTLAIIQSQLSATVSIEQKTINTTLEKESKSKEDLDGVTHKVYFDVEVSGKPIGRITMGLFGKTVPKTIENFRALCTGEKGRGKSGKPLHYKGSAFHRIIPSFMIQGGDFTLGDGRGGESIYGERFADENFKLNHTSPGLVSMANAGPDSNGSQFFITTVATHWLDGKHVVFGKVLSGMEVVYKIEELGSRNGAPTQKVVISDSGELPL* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0054 228 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 63 222 IPR002130 GO:0000413|GO:0003755
Vvi13g0054 228 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 62 225 IPR002130 GO:0000413|GO:0003755
Vvi13g0054 228 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 79 94 IPR002130 GO:0000413|GO:0003755
Vvi13g0054 228 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 173 185 IPR002130 GO:0000413|GO:0003755
Vvi13g0054 228 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 186 201 IPR002130 GO:0000413|GO:0003755
Vvi13g0054 228 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 158 173 IPR002130 GO:0000413|GO:0003755
Vvi13g0054 228 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 115 127 IPR002130 GO:0000413|GO:0003755
Vvi13g0054 228 SUPERFAMILY Cyclophilin-like 57 226 IPR029000 -
Vvi13g0054 228 FunFam Peptidyl-prolyl cis-trans isomerase 55 227 - -
Vvi13g0054 228 CDD cyclophilin_ABH_like 59 224 - -
Vvi13g0054 228 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 110 127 IPR020892 GO:0003755|GO:0006457
Vvi13g0054 228 Gene3D - 46 227 IPR029000 -
Vvi13g0054 228 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 60 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0054 Vvi-Chr13 497639 500735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0054 73 207 U-box Gene Family AT5G67530 46.324 1.91e-28 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0054 K01802 - vvi:100241683 449.129