Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0051 ATGGCAGAGGCTATTGTGTCCTTTGCTGTGGGAAGGCTAGGTGACTTGTTAATCCAAGAAGCAAGTTTCTTACATGAGGTGAGTGACAAAGTTGTGGAAATTCGGACTGAGCTGAAGCGGATGCAGTGTTTTTTGAAAGATGCAGATGCAAGACAAGATGAAAATGAGGTTATTCACAATTGCGTTGTGGAAATTAGAGAGGCTGCTTACGATGCTGAAGACATCATAGAGACCTTTGCCTCCAGAGTTGCCCTGAGGAGGAGGAGAAGCAGTCCCCAAAACATCTTCAAGAGGTGTGGTTGGATCTTCTTTGAATTTATAGCACGCCAGAAGGTTGGGACAGAAATTGATGCCATTAAAAAAAGGGTCTCCAATCTCACTACAAGCTTACAAAAGTCTGACATAAGGAGCATTACAGAGGGAGAAAGCTCAAGTTCCAGAAATGAGAGGCCACAACAGGGTAGGCCTACTTACTCCCACCTTGATGATAAAGATATCATTGGGGTGGAAGAAAGTGTGAAGATTTTGGTGGAACAGCTGGTGGAACCAGACAGGAAATGGTCAGTTGTGGCCATATATGGTATGGGGGGTCTGGGAAAGACCACTCTTGCTCGGAAGGTTTATCATCATGTCCATGTTAAGCATCATTTTGACCATTTTGCTTGGAGTTCCATATCTCAACACTTGGACAGCAGGGCTGTTGTAAGAGGAATACTGATCAAATTGACATCTCCTTCTGAAGAGCAAAGACGGGAAATTGACAACATGAGTGATGACGAGCTATTCAAGAGAGTGTATAAAATTCAAAAGGAAAAGAAATGTCTAGTGATTCTTGATGATGTGTGGAGAAAACAAGATTGGGACAGTCTAAGACCTGGCTTTCCACTGCGAAAGGAGGGCAGCAAGATAGTGATCACCACTCGGAACAAAGCTGTGGCTTTACATGTGGATCCACCAAATGTCTTTTTGCACCAACCGAGGTTATTAACTGAGAAGGAGAGTTGGGAGCTTCTACAGATGAAGGCACTCTCTACAGGTTCTACCCTTAACAAGGATATGGAGGAGCTAGGAAAGAAAATGGCTAAACGTTGTAATGGGTTGCCTTTGGCAATTGTTGTGCTTGGAGGACTTTTGGCCACTAAACCCTGCACATTCAATGCCTGGGGAATAGTAGATCGAAATATTAAATCATACTTTAGAAGAGGTGATGGCAATTCCAAGCAACAAAGTAGTGAAGTGTCAGATGTGTTAGCTTTAAGTTACCGAGATTTGCCATACCATTTAAAACCTTGCTTCCTCTATTTGGCTCATTTCCATGAGAACTATAAAATACCAACAAATACTTTGGTTCGGATGTGGATGGCTGAAGGAATCATACCTGAAATGCCTGACAAAGGGGTGGGAGAAGAAACAATGGAGGATGTTGGACATCAGTATCTAGATGAGCTAATTGGAAGGTGTATGGTTCAAGTGGGAGTAAGAAATTCAAATGGAAGAGTCAAAACTTGCTGGTTGCATGATCTTATGCGAGATCTATGTTTGTCAATAGCCAAAGAAGAAAATTTTCTTGATATTATCAATCTTCAGCAAGTGGAGACATTTTCATCTTCTATGGTAACAGCATCCACTTCAAATAAAGTCCGAAGATGTGCCATTTATCTGGATCAATCCGTTCCTATAGAGAATGTAGCAAAGGCAAGACTAGTCCCTGAAAATAGAGATGACGATGTTAACAACTATGTCAATTTTAACCCAGAAAATGCTACACACCTCCGATCTCTTCTAATATTCTATCCATCAACACCAAATACAGTTCATTGGATGCTGAGGAAGCTGAGCTTGAAGAACTTCAAATTATTAAGAGTATTGAGTCTTGAGAGACTTTCACTGGAAGAAAAATTACTAAGAGAAATAGGCAACCTCATACACCTGAAGTATTTGAGTTTCAGGGATGCTAAGCTGTTAAGCTTCCCATCATCTATAAAAAATTTAGGTTGCATCCAGACGTTGGATTTACGGTTTTGTAATGATGATAACCTTGTAACTTGTACTAAAATAGGTGATGTGATATGTATGATGAAATTACTAAGACACCTCTACCTTCCTAGATATCTTTATGTGGGTACTAGTAAGGTGCAATGGGACAAATTGAGCAACTTGGAGACGCTAAAAGCCTTTGATGCAAGACAATGGGCTGTAAAAGATTTGGTCCAATTGACCAAGCTTCGGAAATTGAAGATAAATAATCTCAACAGCTTTAAAGAGTTGGAGGTAATTCTCAAGCCCCCCTGTCCTTTTTCACTTCATTCCCTGGTTTTGGATGAGGTGAGCACCAAAATGGAAGAAACGGATCTAAGGCAATTATCAATGTGTCGACATCTTTATGAGCTATTCTTGGGAGGAGAAATAAGCAACTTGCCCGGGCACGGCCACTTCCCTTCAAACCTCACTAAGTTAACCTTGTCTTATTCTCTCTTAAAACAAGATCCCATACCGATTCTGGAGAGGCTTCCTTACTTGACAATCCTACGCTTATTTAATTCATATGATGGGGAAGAAATGGTTTTCTCTGGAACTGGGTTCCCTCAACTCAAATATCTGCAACTCTCCTATATTGAATTCTTAAAAAGGTTAAGGGTGTGTAAAGGTGCAATGCCTAGTCTAGTGAGTTTAACAATCCATAGCTGCATGTCATTGGAAGCGGTTCCTGAAGGACTGATACACATCACTACCCTTAACGAATTGAAGTTTGAGTATATGCCCATAGAGTTCATGGAGAGGCTTCAAGTGATACGTGGAAAAGAAGGGGAGGATTTCTACAAAGTCAAGCACTTGCCTTCCATCGCATTCAGTGCAATATCTGAGGATGATGTTTATCAAATGCTTATGAAGATCTTAAATAGTGATCCAAGTGACAACATGAAGATTCTAAAGGCACTTATAAATGCCGAGGACGATCAGTTGCCACTTCTTGATGGCTCTACAAATAGAAGGGTAAAATTGGAGGTGCTGAAGGGGAAGAATGTGTTTCTGCTCATATCAGGCCTAGACTTTCCCACTGAGGATCTCTTACTTCTCAAACATATTCACAAGGAATTCTGTTTGGAGCGGAGTTTGATACATAGGCGGCATGAGTTTATGTGGATCCCAATTGTGGATCATTCTTTTAAGTGGAAAGATTCTCAGCAGCAAGAGATGTTTGAGTGTCTGCAGGCCTCAATGCCATGGTATTCGGTCTGCACTCCTGCACGCATTGATAAGGCAATCATCAGGTTCATCAAGGAGGAGTGGCACTTCCAGAATAAGCCCATCCTTGTGGTGCTAGATTCACAAGGAAAAGTGATGAACCGTAATGCTATTCACATGATGCGGATATGGGAGGACACCGGCTACCCATTCACCAGTTCGAAAGAGAAAGCTCTGTGGGGGGCAGAGACTTGGGGGCTTGAGCTGCTGGTTCATGACGTACACCCAACCATACAGAACTGGATCAAAAAGGGAAAATTCATTTGCTTGTATGGAGGGACTGACATGAAGTGGATCCAAACATTCACAACCGTAGCAAAGGAAGTTGCGTCAGCTGAGCGGATCCCCTTAGAAATGGTGTACGTGGGAAAGAGCAACGTGGGAAAGAGCAACCACAGAGAGCGAGTCCTACAATGCATAGCATTCATCAGTATGAAGGAACTGAGCCACTGGTGGTCAGACCGCACCATGGTCTGGTTCTGGAGCCGGCTGGAGAGCATGTTATTCTCCAAGATCCAGCTAGGAAGGGAGGACGAGAAGGACCCCATGTTGGAGGAAATCAAGAAACTGCTCAGCTACGACAAGGAAGGAGGATGGGCTATGCTCAGCAAGGGATCCTCGCCAATTTTCAGTGGTTCCAGCGCCACTGTTTTGCCTACCTTCTTGGCGTACCATGCATGGAAAGAGCAGGTCCCGACGAAGGGTTTTGATCAGGCAGTCATGGATTACCATGACCAGCTTCGCAACGATTCTGATTACCCGAAGTTTGATTTTATTGATATTGAATGA 4035 0.4273 MAEAIVSFAVGRLGDLLIQEASFLHEVSDKVVEIRTELKRMQCFLKDADARQDENEVIHNCVVEIREAAYDAEDIIETFASRVALRRRRSSPQNIFKRCGWIFFEFIARQKVGTEIDAIKKRVSNLTTSLQKSDIRSITEGESSSSRNERPQQGRPTYSHLDDKDIIGVEESVKILVEQLVEPDRKWSVVAIYGMGGLGKTTLARKVYHHVHVKHHFDHFAWSSISQHLDSRAVVRGILIKLTSPSEEQRREIDNMSDDELFKRVYKIQKEKKCLVILDDVWRKQDWDSLRPGFPLRKEGSKIVITTRNKAVALHVDPPNVFLHQPRLLTEKESWELLQMKALSTGSTLNKDMEELGKKMAKRCNGLPLAIVVLGGLLATKPCTFNAWGIVDRNIKSYFRRGDGNSKQQSSEVSDVLALSYRDLPYHLKPCFLYLAHFHENYKIPTNTLVRMWMAEGIIPEMPDKGVGEETMEDVGHQYLDELIGRCMVQVGVRNSNGRVKTCWLHDLMRDLCLSIAKEENFLDIINLQQVETFSSSMVTASTSNKVRRCAIYLDQSVPIENVAKARLVPENRDDDVNNYVNFNPENATHLRSLLIFYPSTPNTVHWMLRKLSLKNFKLLRVLSLERLSLEEKLLREIGNLIHLKYLSFRDAKLLSFPSSIKNLGCIQTLDLRFCNDDNLVTCTKIGDVICMMKLLRHLYLPRYLYVGTSKVQWDKLSNLETLKAFDARQWAVKDLVQLTKLRKLKINNLNSFKELEVILKPPCPFSLHSLVLDEVSTKMEETDLRQLSMCRHLYELFLGGEISNLPGHGHFPSNLTKLTLSYSLLKQDPIPILERLPYLTILRLFNSYDGEEMVFSGTGFPQLKYLQLSYIEFLKRLRVCKGAMPSLVSLTIHSCMSLEAVPEGLIHITTLNELKFEYMPIEFMERLQVIRGKEGEDFYKVKHLPSIAFSAISEDDVYQMLMKILNSDPSDNMKILKALINAEDDQLPLLDGSTNRRVKLEVLKGKNVFLLISGLDFPTEDLLLLKHIHKEFCLERSLIHRRHEFMWIPIVDHSFKWKDSQQQEMFECLQASMPWYSVCTPARIDKAIIRFIKEEWHFQNKPILVVLDSQGKVMNRNAIHMMRIWEDTGYPFTSSKEKALWGAETWGLELLVHDVHPTIQNWIKKGKFICLYGGTDMKWIQTFTTVAKEVASAERIPLEMVYVGKSNVGKSNHRERVLQCIAFISMKELSHWWSDRTMVWFWSRLESMLFSKIQLGREDEKDPMLEEIKKLLSYDKEGGWAMLSKGSSPIFSGSSATVLPTFLAYHAWKEQVPTKGFDQAVMDYHDQLRNDSDYPKFDFIDIE* 1345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0051 1344 Pfam Rx N-terminal domain 5 96 IPR041118 -
Vvi13g0051 1344 Gene3D - 328 419 IPR042197 -
Vvi13g0051 1344 SUPERFAMILY L domain-like 505 948 - -
Vvi13g0051 1344 MobiDBLite consensus disorder prediction 134 160 - -
Vvi13g0051 1344 PRINTS Disease resistance protein signature 662 678 - -
Vvi13g0051 1344 PRINTS Disease resistance protein signature 189 204 - -
Vvi13g0051 1344 PRINTS Disease resistance protein signature 268 282 - -
Vvi13g0051 1344 PRINTS Disease resistance protein signature 364 378 - -
Vvi13g0051 1344 MobiDBLite consensus disorder prediction 134 155 - -
Vvi13g0051 1344 Pfam Sieve element occlusion C-terminus 1136 1332 IPR027944 -
Vvi13g0051 1344 Gene3D - 420 515 IPR036388 -
Vvi13g0051 1344 Gene3D - 159 319 IPR027417 -
Vvi13g0051 1344 CDD RX-CC_like 2 127 IPR038005 -
Vvi13g0051 1344 Gene3D Ribonuclease Inhibitor 584 940 IPR032675 -
Vvi13g0051 1344 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 435 IPR027417 -
Vvi13g0051 1344 FunFam Probable disease resistance protein At5g66910 328 420 - -
Vvi13g0051 1344 Pfam NB-ARC domain 170 422 IPR002182 GO:0043531
Vvi13g0051 1344 FunFam Probable disease resistance protein At1g61300 149 319 - -
Vvi13g0051 1344 PANTHER PROTEIN SIEVE ELEMENT OCCLUSION B-LIKE 142 1334 IPR039299 GO:0010088
Vvi13g0051 1344 Gene3D - 5 113 - -
Vvi13g0051 1344 FunFam Probable disease resistance protein At1g63360 421 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0051 Vvi-Chr13 473988 480826 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0051 190 381 WRKY Transcription Factor Family AT5G45050 27.317 3.76e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0051 - - vvi:100263824 2657.09