Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0050 ATGGTGGAGGCTATTGTGTCCTTTGCTGTGGAAAGGCTAGGTGACCTGTTGATTCAAGAGGCAAGTTTCTTGCATGGGGTGACTGACAAAGTTGCAGAAATTAAGGTCGAGCTTAGGCGGATGACATGTTTTCTGAAAGATGCAGACGCAAGACAAGATGAGGACGAGACAATTCGCAATTTGGTTGCTGAAATTAGAGAGGCTGCATATGATGCCGAAGACACTGTAGAGACTTTTGCCTTCAAGGTTGCCAGGAGGAGGAGAAGTGGCCTTCAAAACATCCTCAAGAGGTATGCTTGCATCTTATCAGAATTTAAAGCACTCCATGAGGTTGGGACAGAGATTGATGCCATAAAAAACAGAATCTCCAGTCTCAGTACAAGTTTACAGAGCTATAACATAAAGAGCATAGGAGAAGGAGAAAGCTCCGGTTCCAGAAATGAGAGGCAACGTATCCTCAGGCGGTCTTACTCCCACGTTGTTGATGAAGACACAGTTGGAGTGGAGGGAAACGTGAAGATCTTGGTGGAACAGCTCGTGGACCCGGACAAAAGATGCTCAGTTGTGTCGATATGGGGTATGGGGGGCCTGGGAAAAACCACTCTCGCAAAGAAGGTTTATCATCATGGTGCTGTTAGGCGTCATTTTGATTGTTTTGCTTGGAGTTCCGTATCTCAACAATTCAACATCAGAGCGGTTGTACAAGAAATATTATTCAAATTCATGCCTCCTTCTCCAGAGCAGAGGAAGGAAATTGAGAAGATGGGTGAAAATGAGGTATTAAAGAGAGTTTATCGAATACAAGAGGAAAAGAAATGTCTGGTGATTCTGGATGATGTGTGGACTACAGAAGCTTGGGACATGCTAAGACCTGCCTTTCCACTGCAAAAGGTAGGCAGCAAGATACTACTCACCACCCGGAACAAAGCGGTGGCTTCACATGCGGATCCACAAGGCTTCTTGTACCAACCAAAGTGTTTAACTGAGGAAGAGAGTTGGGAGCTTCTTCAGAGAAGAGCCTTCCTCAGAAATGATAATGGTACAGATCCTACCATTAACAACATGGAGGAGGTGGGAAAGGAAATGGCTAGATATTGCGGAGGTTTGCCATTGGCTGTTGTTGTGCTTGGAGGACTTCTAGCTACAAACCACACATTGTATGATTGGGAGAGAATTCATAGAAATATTAAATCATACTTGATGAGAGGCAAAGACAATTACAAGCAGCAAGACAGTGGAGTCTCCGATGTGTTAGCTTTAAGTTTCCAAGATTTGTCATACCACTTAAAATCTTGCTTTCTCTATTTAGCCCATTTCCCCGAGGACTATGAAATTCGAACAAAAAGTTTGGTTCGAATGTGGGTGGCTGAAGGGATTATATCAAAGGTGGGAGAACAAACATTGGAGGATGTTGCAGAAGGGTATCTGGATGAGCTCATTCAAAGGTGTATGGTTCAAGTAGGAAGAACAGGTTCAAATGGAAGAGTCAAAACTTGCCAGTTGCATGACCTAATGCGAGATTTATGCTTGTCAAAGGCAAAAGAAGAAAATTTTCTTGAGATTATCGGTTTTCAGCAAGTGGAAACATTTTCATCTTCTGTGGTAACAACACCTACTCTAGATAAAGTCCGAAGACGTGCCATATATCTAGATCAATCTCTTCCTGTAGAGAGTGATGCAGAGGCTAGAGCAGTCTCCAAAAATAAAGATGAAGATGCTAATATTTATGTCAAATTGAACCCAGAAAATGGCACACCCCTCCGATCTCTTCTAATATTCTCTCCACCAAAAGAAGTGACAGTACACTGGATGCTGAGGAAGTTGAACCTGAAGAAGTTCACATTATTAAGAGTGTTAAGTCTTGAGGGACTTTCACTGGGAGAAAAATTACCAAAATCAATAGGCAACCTCGTACACTTGAAGTTCTTGAGTTTTAAATATGCTAGTCTCTTACGCTTCCCATCATCTATAAGAAATTTAGGTTGCATCCAGACCCTGGATTTACGGTTTTTTCCTAGTGGTGATGAACCGATGATTTGTTTTTGA 2046 0.4242 MVEAIVSFAVERLGDLLIQEASFLHGVTDKVAEIKVELRRMTCFLKDADARQDEDETIRNLVAEIREAAYDAEDTVETFAFKVARRRRSGLQNILKRYACILSEFKALHEVGTEIDAIKNRISSLSTSLQSYNIKSIGEGESSGSRNERQRILRRSYSHVVDEDTVGVEGNVKILVEQLVDPDKRCSVVSIWGMGGLGKTTLAKKVYHHGAVRRHFDCFAWSSVSQQFNIRAVVQEILFKFMPPSPEQRKEIEKMGENEVLKRVYRIQEEKKCLVILDDVWTTEAWDMLRPAFPLQKVGSKILLTTRNKAVASHADPQGFLYQPKCLTEEESWELLQRRAFLRNDNGTDPTINNMEEVGKEMARYCGGLPLAVVVLGGLLATNHTLYDWERIHRNIKSYLMRGKDNYKQQDSGVSDVLALSFQDLSYHLKSCFLYLAHFPEDYEIRTKSLVRMWVAEGIISKVGEQTLEDVAEGYLDELIQRCMVQVGRTGSNGRVKTCQLHDLMRDLCLSKAKEENFLEIIGFQQVETFSSSVVTTPTLDKVRRRAIYLDQSLPVESDAEARAVSKNKDEDANIYVKLNPENGTPLRSLLIFSPPKEVTVHWMLRKLNLKKFTLLRVLSLEGLSLGEKLPKSIGNLVHLKFLSFKYASLLRFPSSIRNLGCIQTLDLRFFPSGDEPMICF* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0050 681 Pfam Rx N-terminal domain 5 90 IPR041118 -
Vvi13g0050 681 PRINTS Disease resistance protein signature 188 203 - -
Vvi13g0050 681 PRINTS Disease resistance protein signature 267 281 - -
Vvi13g0050 681 PRINTS Disease resistance protein signature 366 380 - -
Vvi13g0050 681 Gene3D - 326 420 IPR042197 -
Vvi13g0050 681 Gene3D - 421 513 IPR036388 -
Vvi13g0050 681 Pfam NB-ARC domain 170 423 IPR002182 GO:0043531
Vvi13g0050 681 FunFam Probable disease resistance protein At1g61300 147 318 - -
Vvi13g0050 681 Gene3D Ribonuclease Inhibitor 598 674 IPR032675 -
Vvi13g0050 681 FunFam Probable disease resistance protein At5g66910 326 421 - -
Vvi13g0050 681 Gene3D - 148 318 IPR027417 -
Vvi13g0050 681 CDD RX-CC_like 3 126 IPR038005 -
Vvi13g0050 681 PANTHER DISEASE RESISTANCE PROTEIN RP 34 673 IPR044974 GO:0006952
Vvi13g0050 681 SUPERFAMILY RNI-like 603 671 - -
Vvi13g0050 681 FunFam Probable disease resistance protein At1g63360 422 511 - -
Vvi13g0050 681 Gene3D - 5 112 - -
Vvi13g0050 681 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 146 436 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0050 Vvi-Chr13 465226 467905 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0050 183 377 WRKY Transcription Factor Family AT5G45050 26.500 8.54e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0050 - - vvi:100246685 1316.98