Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0036 ATGATAAACCATGGAGCAGAAGAAAAAAAAAGGATTTTTTTTTTTCTTGGAGAAAGAATATTTCCTTCAACAATGAAGGTTACCAAGGGTAAAGCAGCGGCAAGGAAAGACAAAAAGGAAGCATTGAAGCCTGTTGAGGACAGGAGGCTTGGGAAGCGAAAGGCAGCACTTAAGGCAGATAAAAGTACCAAAAAATTGGCAAAGAAAGAAAAATTGGCCAAGAAGGACCCTAACAAGCCAAAGAGGCCTCCTAGTGCTTTCTTTGTGTTTCTAGAAGAGTTCAGGAAGGTATACAAACAAGAGCATCCCAATGTGAAGGCTGTTTCAGCTGTTGGGAAAGCTGGGGGAGAGAAGTGGAAATCCCTGTCTGAAGCTGATAAAGCTCCATATGAAGCTAAAGCAGCAAAAAGGAAATCGGACTATGAAAAGCTTATGGCAGCATACAACAAGAAACAGGAAAGTATGGCTGATGATGATGAAGAAGAGTCTGACAGGTCAAAATCTGAGGTAAATGATGAAGACGAGGAAACTGGAGAGGAAGAGGAAGAAGATGAGGATGAGGATGAGGACTGA 573 0.4188 MINHGAEEKKRIFFFLGERIFPSTMKVTKGKAAARKDKKEALKPVEDRRLGKRKAALKADKSTKKLAKKEKLAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLSEADKAPYEAKAAKRKSDYEKLMAAYNKKQESMADDDEEESDRSKSEVNDEDEETGEEEEEDEDEDED* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0036 190 SUPERFAMILY HMG-box 71 152 IPR036910 -
Vvi13g0036 190 MobiDBLite consensus disorder prediction 157 190 - -
Vvi13g0036 190 MobiDBLite consensus disorder prediction 30 84 - -
Vvi13g0036 190 Pfam HMG (high mobility group) box 80 149 IPR009071 -
Vvi13g0036 190 SMART hmgende2 79 150 IPR009071 -
Vvi13g0036 190 Coils Coil 156 176 - -
Vvi13g0036 190 MobiDBLite consensus disorder prediction 30 81 - -
Vvi13g0036 190 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 27 182 IPR031061 -
Vvi13g0036 190 MobiDBLite consensus disorder prediction 119 156 - -
Vvi13g0036 190 CDD HMG-box_AtHMGB1-like 81 141 - -
Vvi13g0036 190 MobiDBLite consensus disorder prediction 112 190 - -
Vvi13g0036 190 Gene3D High mobility group box domain 62 165 IPR036910 -
Vvi13g0036 190 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 80 149 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0036 Vvi-Chr13 339995 342545 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Vvi13g0036 HMG_box 2.7e-23 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0036 K25507 - vvi:100246802 245.358