Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0030 ATGATACAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGTGTTAAATGCGGTAGAAGGCATCAAAGAGTCACCATGTTGGACCTGCAGTCCCAGAAACTGGTGGGATCCATATCACCACACATCGGGAATCTGAGCTTTCTGAGAATGCTATTTCTGAGTAATAATTCTCTCAGTGGTGAAATTCCTGCCAATTTATCCAAGCTTGGCTCCTTGTCAAAACTCCAATATCTTTTCATTCATGCCAACAGTTTATCAGGAGGAATCCCTCGTTCTTTTGGTAACTTATCCTCACTTGAGCGACTTTCTGCAACTCAAAATAACATTGACCTTAGCCTTAGCGGCAACCGGTTCACTGGGTCCATTCCTGTTTCATTATCCAATGCTTCAAATCTAGAATACTTCTCCTGCAACGAGGTATTGGCACTGAACGTAAACAATTTTGGGGGTGTGTTGCCTGAATCTATTGGCAACTGGTCAACTAAGCTTGCAACGCTCCTCCTTGATGGCAACAAAATAGGTGGAAGCATCCCAGCTGGGATAGGCAATCTTGTCAGCCTGGAGAGATTGGAGATGTGGGAAAATCAACTCTCAGGTAGCATTCCGGTTGATATCGGAAAGCTTCAAAACCTACGTAAAGAAAACTCAATTCAAGGTGGAGAATTCAAGAAGGTGCATGAGCCGTCTTTCAATAGAATACTTCCATCCTCTCTTGGGAATCTAGAGAACCTAATTCAACTTGTTTTAGGGAGAAACTATTTTCAGGGCAAAATTCCTTCAAGTCTGGGGAAATGCCAAAATTTGCTCTTCTTGGATCTTTCTCTCAACAATCTTAGTGGCACCATACCCCCTCAAGTTGTTAGTTTATCATCCTTATCAATTTCTCTTGATATATCCGACAACCGTTTGACTGGTGCCCTTCCCATTGAAGTTGGGAATTTGAAAAATTTGGGTGTACTAGATGTTTCTAATAATATGTTGTCTGGTGGAATTCCCAGCAGCGTTGGTAGCTGCACTAGTCTGGAATACCTGTCCATGAAGGGCAACTTCTTCCAAGGTTCCATTCCTTCATCTTTTAGTTCATTAAGAGGCATTCGCATTTTAGATCTGTCTCACAACAATTTGTCAGGCAAAATTCCAGAATTTCTTCAAGACATTCACTTTCAGTTAGTGAATCTATCTTACAATGATTTTGAGGGCATCTTACCAACAGAAGGTGTCTTTAAGAATGTGAGTGCAACTTCCATCATGGGAAACAGTAAGCTCTGTGGGGGCATTCCTGAATTTCAGCTGCCAAAATGCAACTTGCAAGAGCCTAAGAAAAGGGGACTGAGCCTTGCCTTGAAGATAATAATCGCCACTGTTTCTGGGCTTTTAGCAATAACTTGTGTGCTGTCTTTCCTAATCTTTCTCTGGTTGAGAAAGAAAAAAGGAGAACCTGCTTCAAGCTCTTCAGAGAAATCACTTCTGAAGGTGTCCTACCAGAGTCTCCTAAGGGCAACTGATGGGTTCTCTTCCTCCAACTTGATTGGTGTTGGTAGCTTTGGGTCTGTATATAAAGGAATTCTTGATCATGATGGAACAGCCATTGCTGTGAAGGTACTTAACCTTCTGCGGAAAGGAGCTTCCAAGAGTTTCATAGCTGAGTGTGAGGCCTTGAGGAACATCAGACATCGGAATCTGGTCAAGGTACTCACTGCATGTTCAGGTGTTGATTATCAGGGTAATGATTTCAAAGCTGTTGTTTATGAGTTTATGGTCAACGGAAGCTTGGAGCAGTGGCTTCATCCAACTCCTACAACAGCAGAAGCATCTGCGCCACCAAGGAAGCTTAATTTTCTTCAAAGACTAAACATTGCCATTGATGTTGCTTGTGCATTGGATTATCTTCATCATCAGTGCCAGACACCAATAGTCCACTGCGACCTCAAGCCAAGCAATGTTCTTCTGGATACTGAAATGACTGGACATGTAGGCGACTTTGGAATCGCAAAATTCCTTCCAGAAGCAGCCACCAGAGTTCCTGAAATTCAATCAAGCTCCATTGGAATAAGAGGAACCATTGGCTACGCTGCTCCAGAGTATGGTATGGGAAGTGAGGTTTCAACCAGTGGTGATGTATACAGCTTTGGCATACTGTTGTTGGAGATGTTTACCGGGAAGAGACCCACTGAGGACATGTTTAAAGACAGCCTGAACATTCATAACTTTGTTAAGACGGCTGTGCCTGAACGGGTGGCGGAGATTGCAGATCCAGTACTTCTTCAGGAAGGAGTAGAAATGGACAATACTACGAGCCAGAGAAGAATGGCAAGTAGTCATGATGCGCAGGAGTGCTTGATTTCAATATTTGGAATTGGACTGGCTTGTTCCGCAGAATTGCCAAGGGAAAGAAAGAACATCACTGATGCTGCAGCTGAATTGAATTCTGTCAGGGACATTTTTCTTGGAACCGGACTACATATAAGAGACGATCGACAGGAAGAAGAAGAAGAAGAAGAGAGAGAGAGAGAATCAGGCAACACAAATTCTAGAGAGAAGAGAGATTTTATTGATTAG 3360 0.3229 MIQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVKCGRRHQRVTMLDLQSQKLVGSISPHIGNLSFLRMLFLSNNSLSGEIPANLSKLGSLSKLQYLFIHANSLSGGIPRSFGNLSSLERLSATQNNIDLSLSGNRFTGSIPVSLSNASNLEYFSCNEVLALNVNNFGGVLPESIGNWSTKLATLLLDGNKIGGSIPAGIGNLVSLERLEMWENQLSGSIPVDIGKLQNLRKENSIQGGEFKKVHEPSFNRILPSSLGNLENLIQLVLGRNYFQGKIPSSLGKCQNLLFLDLSLNNLSGTIPPQVVSLSSLSISLDISDNRLTGALPIEVGNLKNLGVLDVSNNMLSGGIPSSVGSCTSLEYLSMKGNFFQGSIPSSFSSLRGIRILDLSHNNLSGKIPEFLQDIHFQLVNLSYNDFEGILPTEGVFKNVSATSIMGNSKLCGGIPEFQLPKCNLQEPKKRGLSLALKIIIATVSGLLAITCVLSFLIFLWLRKKKGEPASSSSEKSLLKVSYQSLLRATDGFSSSNLIGVGSFGSVYKGILDHDGTAIAVKVLNLLRKGASKSFIAECEALRNIRHRNLVKVLTACSGVDYQGNDFKAVVYEFMVNGSLEQWLHPTPTTAEASAPPRKLNFLQRLNIAIDVACALDYLHHQCQTPIVHCDLKPSNVLLDTEMTGHVGDFGIAKFLPEAATRVPEIQSSSIGIRGTIGYAAPEYGMGSEVSTSGDVYSFGILLLEMFTGKRPTEDMFKDSLNIHNFVKTAVPERVAEIADPVLLQEGVEMDNTTSQRRMASSHDAQECLISIFGIGLACSAELPRERKNITDAAAELNSVRDIFLGTGLHIRDDRQEEEEEEERERESGNTNSREKRDFID* 1120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0030 1119 Coils Coil 2 3 - -
Vvi13g0030 1119 MobiDBLite consensus disorder prediction 1089 1119 - -
Vvi13g0030 1119 PANTHER OS04G0122200 PROTEIN 281 1079 - -
Vvi13g0030 1119 SMART serkin_6 771 1083 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g0030 1119 SUPERFAMILY L domain-like 280 479 - -
Vvi13g0030 1119 Gene3D Phosphorylase Kinase; domain 1 750 852 - -
Vvi13g0030 1119 ProSiteProfiles Protein kinase domain profile. 771 1119 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g0030 1119 FunFam LRR receptor-like serine/threonine-protein kinase EFR 401 707 - -
Vvi13g0030 1119 SMART LRR_typ_2 339 362 IPR003591 -
Vvi13g0030 1119 SMART LRR_typ_2 508 532 IPR003591 -
Vvi13g0030 1119 SMART LRR_typ_2 581 605 IPR003591 -
Vvi13g0030 1119 SMART LRR_typ_2 629 652 IPR003591 -
Vvi13g0030 1119 SMART LRR_typ_2 451 475 IPR003591 -
Vvi13g0030 1119 SMART LRR_typ_2 312 336 IPR003591 -
Vvi13g0030 1119 Pfam Protein kinase domain 773 1006 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g0030 1119 SUPERFAMILY L domain-like 407 703 - -
Vvi13g0030 1119 MobiDBLite consensus disorder prediction 1104 1119 - -
Vvi13g0030 1119 ProSitePatterns Serine/Threonine protein kinases active-site signature. 905 917 IPR008271 GO:0004672|GO:0006468
Vvi13g0030 1119 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 853 1086 - -
Vvi13g0030 1119 Gene3D Transferase(Phosphotransferase) domain 1 853 1085 - -
Vvi13g0030 1119 ProSitePatterns Protein kinases ATP-binding region signature. 777 800 IPR017441 GO:0005524
Vvi13g0030 1119 Gene3D Ribonuclease Inhibitor 406 705 IPR032675 -
Vvi13g0030 1119 FunFam LRR receptor-like serine/threonine-protein kinase EFR 742 852 - -
Vvi13g0030 1119 SUPERFAMILY Protein kinase-like (PK-like) 747 1071 IPR011009 -
Vvi13g0030 1119 Gene3D Ribonuclease Inhibitor 274 405 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0030 Vvi-Chr13 281154 293652 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0030 414 696 Receptor kinase-like Gene Family AT3G47570 30.662 4.11e-23 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vvi13g0030 Pkinase 2.3e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0030 - - vvi:100241667 1310.05