Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0029 ATGAGGTCATGGAATGAATCAGTCCACTTCTGCCAGTGGAGTGGTGTCACTTGCGGTCGCCAACACCAGAAGGTGACTGTGTTAGACCTACATTCTCAGCAACTTGTGGGTTTAATATCACCCCATATTGGGAACCTGAGCTTCATCAGAGTACTGCTGCTCCAAAACAATAGTTTCAATGGTGAAATTCCTCAAGAGGTTGGTCGTCTGGGCCGATTAGAGACATTGCGCCTCGACAGTAATTCATTAGATGGTGAAATTCCCTCCAATATATCCAGTTGCTCTAATCTCATTTCTCTAACTATCGGTTTCAACAGTGTGGTAGGGAAACTTCCTGAAGAGCTTGGCTCATTGTCCATGCTCCAATTTCTTGCAGTTCAGCGAAACAATCTATCAGGAAGTATCCCTCCTTTTGGAAACTTATCATCTCTTGGGAAGTTCTCTGCAACCCAGAATAATTTGGTTGGGAAGAAATCACTTCTGAAGGTGTCCTACCAAAGTCTCCTTTGGGCAACTGATGGGTTCTCTTCCTCCAATTTGATTGGTGTTGGGAGTTTTGGGTCTGTGTACAGAGGAATTCTCGTTCATGATGGAACAGTCATTGCTGTGAAGGTACTTAACCTTCTCCGAAAAGGAGCTTCCAAGAGCTTCTTCATAGCTGAGTGTGAGGCCTTGAGGAACATCAGACATCGGAATCTTGTCAAGGTACTCACTGCATACTCAGGTGCTGATTATCAGGGTAATGATGTCAAGTCTCTACCCTGCAATTTGTAG 774 0.4457 MRSWNESVHFCQWSGVTCGRQHQKVTVLDLHSQQLVGLISPHIGNLSFIRVLLLQNNSFNGEIPQEVGRLGRLETLRLDSNSLDGEIPSNISSCSNLISLTIGFNSVVGKLPEELGSLSMLQFLAVQRNNLSGSIPPFGNLSSLGKFSATQNNLVGKKSLLKVSYQSLLWATDGFSSSNLIGVGSFGSVYRGILVHDGTVIAVKVLNLLRKGASKSFFIAECEALRNIRHRNLVKVLTAYSGADYQGNDVKSLPCNL* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0029 257 SUPERFAMILY Protein kinase-like (PK-like) 156 241 IPR011009 -
Vvi13g0029 257 ProSiteProfiles Protein kinase domain profile. 175 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g0029 257 PANTHER OS04G0122200 PROTEIN 51 157 - -
Vvi13g0029 257 SUPERFAMILY L domain-like 5 157 - -
Vvi13g0029 257 Pfam Protein kinase domain 177 241 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g0029 257 FunFam Leucine-rich repeat receptor-like protein kinase 1 137 - -
Vvi13g0029 257 Gene3D Ribonuclease Inhibitor 1 159 IPR032675 -
Vvi13g0029 257 ProSitePatterns Protein kinases ATP-binding region signature. 181 204 IPR017441 GO:0005524
Vvi13g0029 257 Pfam Leucine rich repeat N-terminal domain 2 18 IPR013210 -
Vvi13g0029 257 Gene3D Phosphorylase Kinase; domain 1 160 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0029 Vvi-Chr13 273277 275460 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0029 41 253 Receptor kinase-like Gene Family AT5G20480 32.540 1.15e-27 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vvi13g0029 Pkinase 6.1e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0029 - - qsu:112010017 254.988