Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0027 ATGATGGGATCTATAGGTTATGTTGCACCAGAATACGGAATAGGTGGCTTGGTGTCGCCTCAAGGAGATGTGTACAGCTATGGCATCCTTCTGCTGGAGATGTTCACGGGAAAGAGACCAACAGAGGACATGTTTTCGGATGGATTGAGCCTTCATAATTTATCTAAGATGGCATTTCCAGAAAGGGTGATGGAGATTGTAGATTCAAACTTGGTTGGGGAGTTGGATGAAGACAGAATGTACCACTGCCTGGTTTCATTTGCTAGGATTGGAGTAGCATGTTCTGAAGAATCGGCTAGTGATCGAATGGACATCAAAGATGTGGTGATAGAACTGAATATCATTAAGGAAGTGTATCTTGGGGCAGGAATCCATGGGGAGAGACACATCAAGATGCAATCAGCTGGGAAAGGACCATCTCTGCAGGGTGACTGA 435 0.4506 MMGSIGYVAPEYGIGGLVSPQGDVYSYGILLLEMFTGKRPTEDMFSDGLSLHNLSKMAFPERVMEIVDSNLVGELDEDRMYHCLVSFARIGVACSEESASDRMDIKDVVIELNIIKEVYLGAGIHGERHIKMQSAGKGPSLQGD* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0027 144 Pfam Protein tyrosine and serine/threonine kinase 5 54 IPR001245 GO:0004672|GO:0006468
Vvi13g0027 144 SUPERFAMILY Protein kinase-like (PK-like) 2 117 IPR011009 -
Vvi13g0027 144 ProSiteProfiles Protein kinase domain profile. 1 120 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g0027 144 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 2 117 - -
Vvi13g0027 144 Gene3D Transferase(Phosphotransferase) domain 1 1 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0027 Vvi-Chr13 265957 266475 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0027 3 120 Receptor kinase-like Gene Family AT3G47580 46.667 3.21e-31 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vvi13g0027 PK_Tyr_Ser-Thr 7.9e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0027 - - vvi:100263845 210.69