Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0021 ATGGCTGCTGTTAGTATGGGCCACCATGGCCCAACTATGCCCATATTTCATGGGCTCTGGCCTGCTCGACGATTTTTTGCTTGGTCCCGCTTTCTTTTTGTCATCGACGTCTACATTTCTCCCCCTCCGGTCACTGTGACTGACTATCCGTTGCAATTTCCGATGACATCGTCCGGAGTGTCTAGTTATCGAGATCGGACGTCGGAATTTCGATCTCTCTCTGGAAGAATGAAGAAGATCGGTGGAATGGCCGTTGCAAATCATGCTGAAGATGATCCAGCAACATCGAGATCATTGGCTTCGGCATCATCACGATCCGAATTCAACAAAAAGGCTTCACGAATTGGGTTAGGGATCCACGAGGCATGTCTCAAGATCTCCAGGCTTGCCAAATTGGCAAAAAAGTCATCAATGTTCAATGACCCAATCATGGAAATACAGGAACTAACTGCCTTGATAAAAGATGATATTACTGCACTCAATATAGCAGTTTCAGATTTGCAAACCCTTCAAAACCTTGAGATAGCTGATGGAAATTACTCTGATGATAGAGTCGTCCATTCAAATACTGTTTGTGATGACTTAAAGAACAAACTTATGGGGGCTACTAAACAGCTCCAGGATGTGTTAACAACTAGAACAGAGAATATCAAGGCTCATGAGAATAGGAAGCAGATTTTTTCCACAAATGTATCCAGAGAAAACCCTTTTCAGCAGCATGCAAAGACTGTGACTGAGCCACCTCCTTGGTCAAGTTTATCTAAGACATCTGGGAATTTGCAACCATCAGTGTTGTCGTCAAATGGAGTTCAAGTTGGCAACCAACTGAGCTTGTATTAA 840 0.4357 MAAVSMGHHGPTMPIFHGLWPARRFFAWSRFLFVIDVYISPPPVTVTDYPLQFPMTSSGVSSYRDRTSEFRSLSGRMKKIGGMAVANHAEDDPATSRSLASASSRSEFNKKASRIGLGIHEACLKISRLAKLAKKSSMFNDPIMEIQELTALIKDDITALNIAVSDLQTLQNLEIADGNYSDDRVVHSNTVCDDLKNKLMGATKQLQDVLTTRTENIKAHENRKQIFSTNVSRENPFQQHAKTVTEPPPWSSLSKTSGNLQPSVLSSNGVQVGNQLSLY* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0021 279 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 62 73 IPR021538 -
Vvi13g0021 279 SUPERFAMILY t-snare proteins 105 230 IPR010989 GO:0016020|GO:0016192
Vvi13g0021 279 MobiDBLite consensus disorder prediction 230 267 - -
Vvi13g0021 279 Gene3D - 101 275 - -
Vvi13g0021 279 MobiDBLite consensus disorder prediction 85 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0021 Vvi-Chr13 195175 212910 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0021 61 276 SNARE and Associated Proteins AT5G05760 62.385 8.50e-79 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0021 K08490 - vvi:100244928 544.273