Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0020 ATGGCGGTGAAACCATCCAAGGCCGACAAGAAGATCGCATACGACCAGAAGCTGTGCCAGCTTCTGGATGAGTACAGTCAGATTCTGATCGCTGCCGCTGACAATGTTGGATCCAACCAGTTGCAGAACATTCGCAAGGGTCTGCGTGGAGATTCTGTTGTTCTGATGGGTAAGAATACCATGATGAAGCGTTCCATTAGGCTTCATGCTGAGAAGACTGGAAACACGGCTTTCCTCAATCTCATTCCTCTTCTCGTGGGTAATGTGGGTCTGATTTTCACAAAGGGTGATTTGAAGGAGGTCAGCGAAGAGGTTGCGAAGTACAAGGTTGGAGCTCCTGCTCGTGTTGGATTAGTTGCTCCTATTGATGTCATTGTCCCACCTGGTAACACTGGACTCGACCCTTCCCAGACCTCTTTCTTCCAGGTGCTTAATATTCCTACCAAGATTAACAAGGGTACTGTTGAAATTATCACCCCTGTGGAGCTTATCAAAAAGGGTGACAAGGTGGGCTCTTCTGAAGCAGCCCTGCTTGCCAAGCTTGGGATAAGACCCTTCTCTTATGGTCTTGTTGTGCTGTCTGTTTATGACAATGGCTCAGTTTTCAGCCCTGAGGTGCTTGATCTTACAGAAGAGGATCTCATTGAGAAGTTTGCAGCTGGTGTCTCCATGGTTACCTCACTTTCATTGGCTATCTCATATCCAACCCTAGCAGCTGCACCCCACATGTTCATCAATGCATACAAGAATGTTCTTGCTGTCGCTGTTGCAACCGAGTATTCCTTCCCTCAGGCAGATAAAGTGAAGGAGTACTTAAAGGATCCTAGTAAGTTTGCTGTTGCAACGGCCCCGGTTACAGCGTCTGATGCCGGTGCTGCTCCTGCTGCTTCTAAGGAGGAAGAAAAGAAGGAAGAGCCACAGGAAGAGTCTGATGATGATATGGGTTTCAGTTTGTTCGACTAA 963 0.4766 MAVKPSKADKKIAYDQKLCQLLDEYSQILIAAADNVGSNQLQNIRKGLRGDSVVLMGKNTMMKRSIRLHAEKTGNTAFLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFSPEVLDLTEEDLIEKFAAGVSMVTSLSLAISYPTLAAAPHMFINAYKNVLAVAVATEYSFPQADKVKEYLKDPSKFAVATAPVTASDAGAAPAASKEEEKKEEPQEESDDDMGFSLFD* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0020 320 Gene3D - 114 185 IPR043164 -
Vvi13g0020 320 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 4 302 - -
Vvi13g0020 320 MobiDBLite consensus disorder prediction 305 320 - -
Vvi13g0020 320 Pfam Ribosomal protein L10 7 108 IPR001790 -
Vvi13g0020 320 SUPERFAMILY Ribosomal protein L10-like 9 134 IPR043141 -
Vvi13g0020 320 Gene3D - 6 209 IPR043141 -
Vvi13g0020 320 FunFam 60S acidic ribosomal protein P0 113 186 - -
Vvi13g0020 320 Pfam 60s Acidic ribosomal protein 234 319 - -
Vvi13g0020 320 PIRSF L10E 1 320 IPR030670 GO:0042254
Vvi13g0020 320 Pfam Insertion domain in 60S ribosomal protein L10P 114 183 IPR040637 -
Vvi13g0020 320 MobiDBLite consensus disorder prediction 286 320 - -
Vvi13g0020 320 CDD Ribosomal_P0_L10e 10 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0020 Vvi-Chr13 192094 194111 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0020 1 319 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 83.750 0.0 525
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0020 K02941 - vvi:100250067 572.007