Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0016 ATGGGGGTGGTTAGGGCTGACTCCAAGTGTTCCACGGTTGGGATTCAAGGGATTGCTTGGGCTTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGCTGTCGCTGACGAGGGCAGTGTACTACATGGTGATGCAGTGCCTGGGTGCGATATGTGGTGCGGGTGTAGTGAAGGGTTTCGAGAAGGGCAGGTACAACTCGCTGGGTGGTGGTGCCAATGTGGTGAACGCTGGCTACACCAAAGGAGATGGGCTTGGTGCTGAGATTGTTGGCACCTTCGTCCTTGTCTACACTGTCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCTATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCACTTGGCCACCATCCCCATAACTGGAACCGGCATCAACCCAGCTCGGAGCCTGGGTGCGGCCATCATCTACAACAAGGACCACGCATGGGACGACCACTGGATCTTCTGGGTGGGACCATTCATTGGGGCCGCACTAGCAGCTTTATACCACCAGGTGGTCATCAGAGCCATTCCCTTCAAGTCCAAGTGA 642 0.5592 MGVVRADSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVYYMVMQCLGAICGAGVVKGFEKGRYNSLGGGANVVNAGYTKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWDDHWIFWVGPFIGAALAALYHQVVIRAIPFKSK* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0016 213 PRINTS Major intrinsic protein family signature 108 126 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi13g0016 213 PRINTS Major intrinsic protein family signature 184 204 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi13g0016 213 PRINTS Major intrinsic protein family signature 144 166 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi13g0016 213 PRINTS Major intrinsic protein family signature 22 46 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi13g0016 213 PRINTS Major intrinsic protein family signature 59 78 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi13g0016 213 CDD MIP 14 204 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi13g0016 213 NCBIfam MIP family channel protein 7 201 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi13g0016 213 Gene3D Glycerol uptake facilitator protein. 1 212 IPR023271 -
Vvi13g0016 213 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 6 209 IPR034294 -
Vvi13g0016 213 Pfam Major intrinsic protein 11 201 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi13g0016 213 ProSitePatterns MIP family signature. 40 48 IPR022357 -
Vvi13g0016 213 SUPERFAMILY Aquaporin-like 6 206 IPR023271 -
Vvi13g0016 213 FunFam Probable aquaporin PIP1-2 1 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0016 Vvi-Chr13 154715 155707 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0016 1 213 Major Intrinsic Protein MIP AT4G23400 90.610 1.96e-140 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0016 K09872 - vvi:100233000 433.721