Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0011 ATGGAAGCTCTGGTATGCAGAAAGGTGGGTGATCCGACCTTATCAGATGAAACTTCCCCAATCAGCGTCTCTGCTAGTCACCTAATACCGTCTCTGAATTCTCCCACTGCGGTGAGAGTAAGGGTGAGGGCTACCAGCCTCAACTATGCCAATTACCTCCAGATCCTTGGCAAGTACCAAGAGAAGCCACCCCACCCCTTCATCCCCGGCTCTGATTACTCCGGCATCGTCGAGTCTGTGGGACCCAGTGTTTCTATGTTCAAGATTGGCGACACCGTTTGTTCCGTTGCTGCCCTAGGCTCCTTTGCTCAATACATTGTTGTCGATGAGACCGAACTGTTTCGAGTGCCTGATGGATGCGACCTCGTTGCCGCTGCAGCACTTCCTGTTGCATTCGGGACCTCGCATGTAGCTCTTGTTCACAGAGCTCAATTGACCTCTGCTCAGGTTTTATTGGTTCTAGGTGCGGCTGGGGGAGTTGGGCTTGCAGCTGTCCAGATTGGAAAGGTTTGTGGTGCCACAGTGATTGCTGTTGCTAGGGGAGCTGGAAAGGTTCAAATTTTGAAGTCATTGGGTGTGGATCATGTGGTGGACTCGAGCATCGAAAATGTCACTGAAAGCGTGAAGAACTTCCTGAAGGCAAAAAAGCTCAAAGGGGTTGATGTTTTGTATGATCCAGTTGGAGGCAAGCTTACAAAAGAAACAATGAAGCTTTTGAACTGGGGAGCACACATTTTGGTCATAGGATTTGCAAGCGGAGAAGTCCCTGTTATCCCTGCGAATATTGCTCTTGTTAAGAACTGGACAGTGCATGGACTTTACTGGGGTAGCTACAGGATACATCGACCAGGTGTACTTGAAGATTCAATGAAGGAGCTACTCTCTTGGTTAGCAAGAGGCTTGATTGAGATCCACATTTCTCATTCTTACAACTTGTCAGAGGCTCACTTCGCCTTTTCTGCAATTAAAGATAGGAAAGCGATTGGAAAGGTGATGATTGCTTTTGATGATCACAAAACTGTAAGATCTAAGCTTTGA 1038 0.4769 MEALVCRKVGDPTLSDETSPISVSASHLIPSLNSPTAVRVRVRATSLNYANYLQILGKYQEKPPHPFIPGSDYSGIVESVGPSVSMFKIGDTVCSVAALGSFAQYIVVDETELFRVPDGCDLVAAAALPVAFGTSHVALVHRAQLTSAQVLLVLGAAGGVGLAAVQIGKVCGATVIAVARGAGKVQILKSLGVDHVVDSSIENVTESVKNFLKAKKLKGVDVLYDPVGGKLTKETMKLLNWGAHILVIGFASGEVPVIPANIALVKNWTVHGLYWGSYRIHRPGVLEDSMKELLSWLARGLIEIHISHSYNLSEAHFAFSAIKDRKAIGKVMIAFDDHKTVRSKL* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0011 345 PANTHER SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1 334 - -
Vvi13g0011 345 CDD QOR1 1 333 - -
Vvi13g0011 345 Gene3D - 131 278 - -
Vvi13g0011 345 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 120 283 IPR036291 -
Vvi13g0011 345 Gene3D - 33 329 - -
Vvi13g0011 345 SUPERFAMILY GroES-like 33 146 IPR011032 -
Vvi13g0011 345 Pfam Zinc-binding dehydrogenase 159 298 IPR013149 -
Vvi13g0011 345 SMART PKS_ER_names_mod 22 333 IPR020843 GO:0016491
Vvi13g0011 345 Pfam Alcohol dehydrogenase GroES-like domain 36 95 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0011 Vvi-Chr13 112462 115826 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0011 65 264 Monolignol Biosynthesis Gene Families AT1G72680 26.582 3.66e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0011 K00344 - vvi:100253655 665.225