Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0007 ATGGAGGAGGCAGCTCTTGTTGTGAAGATGCTTTGCTCCGTGTTGGTTGTGGGGGTGTTCTGCATATTCCTTCATCTCTACAATCTTATGTGGGTAAGGCCGGAAAGGCTGAGGGGAAAGCTGAGGAGGCAAGGCATCCGAGGGCCTCCGCCTTCATTTATATACGGGAATGTCCCTGAGATGCAGAAAATTCAATTGTTGATGGCGATGAAGCCTCCCAACCATGCTCAGATTGTGGCCCATGATTACACTTCTACCCTCTTCCCCTACTTCGAGCAATGGAGAAAAGCATACGGTCCTGTATACACGTATTCAACTGGGAATAGGCAACATTTGTACGTGAACCATCCGGAAATGGTGAAGGAAATGAATCAGAGTACGAGCTTGGAGTTGGGAAAGCCTTCTTATGTGACCAAGACTCTTGCACCAATGCTTGGTAATGGCATTCTCAGGTCCAATGGCAATACTTGGGCTCACCAGAGGAGGATCGTTGCACCCGAGTTCTTCATGGACAAGGTCAAGGGGATGGTGGGACTCATGCTGGAGTCAGCACAGCCACTGCTGACGAAATGGGAGGACTGCATTCAAGCACATGGTGGAGTCTCAGCGGATGTGATGGTGAATGAGGATTTGAGAAGCGCCTCAGCAGATGTCATCTCAAGGGTTTGCTTCGGAAGCAGTTATGGTAAAGGCAAACAGATTTTCTCCAAGCTCAGGTCTCTTCAACAACTCATTACCAACCAGGCTTTCCTTTTCGGTGTTCCCAGTTTCAGATTTCTCTGGGCCAACAAGCAAAAGGAGCTAAAAAACTTGGAGAGAGAGGTAGAATCATTGATATGGAAAGCAGTAAAAGAGCGAGAACAAGAATGCTTAGAGACATCGACCCTATCATCTGACAAAGATCTGATGCAACTGCTACTGGAGAGTGCCATCAATGATCCAAATTTGGGCCAGGCCTCGTCCAAGCGTTTTATAGTTGATAATTGCAAAAGCATATACTTTGCAGGGCATGAGTCTACTGCTGTTGCTGCCTCCTGGTGCTTGATGCTATTGGCTTTACATCCAGATTGGCAAGCTCGAATTCGGGCAGAGATAGCCGAGGTTTGCGGGGATAACATGCCAGATGCAGATTCAATCACCAAGATGAAATGGATGACTATGGTGATTCAAGAAACCCTGCGGCTGTATCCACCGGCAGCATTCGTGTCAAGGGAAGCGCTGGAGGAAATCCAAGTGGGTAATTTCATTGTCCCAAAGGGTGTATGCATATGGACCTTGATTCCAACTCTGCACCGGGATACGGATATCTGGGGGCCAGATGCCAACCAGTTCAAACCAGAGAGGTTTGAAAATGGGGTCTCTAAAGCTTGCAAATTTCCCCAAGCCTACATTCCATTTGGATTGGGTCCTCGCCTATGCCTTGGTCGCAACTTTGCCATGGTCCAATTGAAGATTATCCTCTCCCTCATCATCTCCAAATTTACATTCACATTGTCGCCTACATATCGCCATTTTCCTGTCTACAGAATGATTGTAGAACCTGGTGATGGTGTACATATCCGTATTCGAAAGATCTGA 1578 0.4734 MEEAALVVKMLCSVLVVGVFCIFLHLYNLMWVRPERLRGKLRRQGIRGPPPSFIYGNVPEMQKIQLLMAMKPPNHAQIVAHDYTSTLFPYFEQWRKAYGPVYTYSTGNRQHLYVNHPEMVKEMNQSTSLELGKPSYVTKTLAPMLGNGILRSNGNTWAHQRRIVAPEFFMDKVKGMVGLMLESAQPLLTKWEDCIQAHGGVSADVMVNEDLRSASADVISRVCFGSSYGKGKQIFSKLRSLQQLITNQAFLFGVPSFRFLWANKQKELKNLEREVESLIWKAVKEREQECLETSTLSSDKDLMQLLLESAINDPNLGQASSKRFIVDNCKSIYFAGHESTAVAASWCLMLLALHPDWQARIRAEIAEVCGDNMPDADSITKMKWMTMVIQETLRLYPPAAFVSREALEEIQVGNFIVPKGVCIWTLIPTLHRDTDIWGPDANQFKPERFENGVSKACKFPQAYIPFGLGPRLCLGRNFAMVQLKIILSLIISKFTFTLSPTYRHFPVYRMIVEPGDGVHIRIRKI* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0007 525 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 466 475 IPR017972 GO:0005506|GO:0016705
Vvi13g0007 525 PRINTS E-class P450 group I signature 324 341 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g0007 525 PRINTS E-class P450 group I signature 95 114 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g0007 525 PRINTS E-class P450 group I signature 344 370 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g0007 525 PRINTS E-class P450 group I signature 463 473 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g0007 525 PRINTS E-class P450 group I signature 214 232 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g0007 525 PRINTS E-class P450 group I signature 473 496 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g0007 525 PANTHER CYTOCHROME P450 FAMILY MEMBER 23 508 - -
Vvi13g0007 525 Coils Coil 261 288 - -
Vvi13g0007 525 PRINTS P450 superfamily signature 473 484 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g0007 525 PRINTS P450 superfamily signature 335 352 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g0007 525 PRINTS P450 superfamily signature 464 473 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g0007 525 PRINTS P450 superfamily signature 387 398 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g0007 525 Gene3D Cytochrome P450 32 525 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g0007 525 Pfam Cytochrome P450 85 500 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g0007 525 SUPERFAMILY Cytochrome P450 82 523 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0007 Vvi-Chr13 98215 101623 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0007 119 522 Cytochrome P450 AT5G24900 58.151 1.08e-177 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0007 K20661 - vvi:100258799 1058.9