Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0004 ATGTCTATTGAAGAACTCAAAGATGATCCTATTGGGGGCAAAAGCATCACCTATGAGGATGAAATCATATTGAAGCATTGTCGGGATACTCATTGTCATTTCTGCTTTAATGAATTGCCAGCAGATTCAGTCCCTTGTACATCATGTTCAATACCACTGTACTGCTCTCAGCATTGTCAAATGCAAGCTGGAGGGCAAGAGTTGAGGAATAATTCTAAGAATCATGGTATTTGCAAAAATCTATCTAGTGATCTTGAAAAATATGTTGCGGGGATTACTTTACCCAAAGATTCTGATTCAAACATTGAGTGGATTGCCGAACATAAACATGAATGTAAAGGTGTAAACTGGCCTGCAGTATTGCCTCCTGAGATTGTTTTGGCTGGTCGAGTTATGGTGAAGTCTGTAGAGCAAAAAAAACATTCTTGCAATGCTTCTAACCTCATGGACACTTTGGACCTTTCTCACAGTTATAAAACAATGGCTCCAGAAAGCAAATTGGATTTGCATATATATTCCGTTGTATTGCTGTATTGTCTTCAACATTCTTATGGCTTTGAACTTCCATTAAATGGAATTTCTATATCACAGCTCATTATACTTATATCTCAAATCAAGGTGAATTCTATTGCAATTGTCCGCATGAAATTCATGGATGGTTATAGTCCACTAGATCAATCAGTGAACTTTTCACCTGCTGGAGGGGCTTTCACCAGCAACATGGAACAGGTCAGAGTGGGACAAGCTATTTATTCAGTTGCCAGTTTGTTTAATCATTCTTGCCAGCCAAACATCCATGCATATTTCCTCTCACGTACTCTCTTTCTACGAGCAACAGAACATGTGGCAGTAGGGTGTCCCCTAGAGTTATCTTATGGTCCACAGGTTGGGCAGTGGGATTGCAAAGACCGCCAGAAGTTTCTCAAAGATGAGTACTCATTTAGATGTGAATGCAGTGGTTGTTCAGAGCTAAATGTATCTGACCTTGTTCTAAATGCATTCCGGTGTGTAAATCCAGATTGTTTTGGTACAGTCTTAGATAGCTGTGTGATCAAGTATGAAAACAAAAAATTTGAGCGCTTCCAAGGTGTTCCTCAAGATTGCATCTCAGAACCTCATTTGCAGTTAAAAAATGATGGCATAAGAGAAGTGGCACACCAAGCATTTGCCAATTCCTCCTTTCGTGCTGCACCTGGATATTGTTTACATTGTGGTGCTTATCGTGATCTAGAAGCCTCACATGCAACAGTCGGGGAAGCTGGAATTTATATCAGTAGGCTGCAGGAAGCAATAGTTTCAAAAGAAGTTCCAGCTACCACATTTTCAGATGCTTTGAGATCTCTTGATCTACTGAAATCAACGTTGCATGCATATAACAAAGGCATTGCAGAAGCAGAGGACTGGATTGCACAGGCATTTTGTATGATTGGAGAGTTACAACCTGCAATGCACCATTGTAAAGCATCAATTGAGGTAAATTTTCCAGCCATTTCATTTTGTTTTTTCTTTTTGTAG 1515 0.3967 MSIEELKDDPIGGKSITYEDEIILKHCRDTHCHFCFNELPADSVPCTSCSIPLYCSQHCQMQAGGQELRNNSKNHGICKNLSSDLEKYVAGITLPKDSDSNIEWIAEHKHECKGVNWPAVLPPEIVLAGRVMVKSVEQKKHSCNASNLMDTLDLSHSYKTMAPESKLDLHIYSVVLLYCLQHSYGFELPLNGISISQLIILISQIKVNSIAIVRMKFMDGYSPLDQSVNFSPAGGAFTSNMEQVRVGQAIYSVASLFNHSCQPNIHAYFLSRTLFLRATEHVAVGCPLELSYGPQVGQWDCKDRQKFLKDEYSFRCECSGCSELNVSDLVLNAFRCVNPDCFGTVLDSCVIKYENKKFERFQGVPQDCISEPHLQLKNDGIREVAHQAFANSSFRAAPGYCLHCGAYRDLEASHATVGEAGIYISRLQEAIVSKEVPATTFSDALRSLDLLKSTLHAYNKGIAEAEDWIAQAFCMIGELQPAMHHCKASIEVNFPAISFCFFFL* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0004 504 Pfam SET domain 243 293 IPR001214 GO:0005515
Vvi13g0004 504 Gene3D Tetratricopeptide repeat domain 301 493 IPR011990 GO:0005515
Vvi13g0004 504 SUPERFAMILY SET domain 32 299 IPR046341 -
Vvi13g0004 504 Gene3D SET domain 206 292 IPR046341 -
Vvi13g0004 504 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 22 492 - -
Vvi13g0004 504 SUPERFAMILY SET domain 243 323 IPR046341 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vvi13g0004 SET 6e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0004 K24634 - vvi:100263830 967.222