Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1531 ATGAGTTCACCACCAAGAGAGTTGCCTGAATTCTGCAACGTGTATCTCCCAGAGTACAGCTCGGACAGACTGCTCATCCCAACAGCTTTTTTAGGGCACTTTAATGGCGTTGTGCCTGAAAAGGCCATCCTCAGAGAATTTTCTGGGAGAGTTTGGCTCGTGGAGGTAGGCTTAATTGGAAAGGATGTGTACTTTCTGAACGGTTGGCAGCGATTTCGGACAGATAATTCCCTAGAGGAGGGGGTCTTTTTGGTTTTCCGTTATGATGGCAGTCATATATTTGATTTTAAATTGTTTGGGAGAAATCAATGTGAAAAGATAGAGACTGACAACGATCAACTTCAAGCTCAGATGCAAGAAACAGAGCCCTTTCAACAGTTAGTGACACCTAGTTCTATCACTCCATGGGTTTGTCCTCAGCCAGGAAAGGAAGTTGACCAAGAAGTGGGAAAAAAATCCCCTTTCACCTTACCCAGAAGAAAAAGGAAAGCAGCTAAATTGCCTGTAACAACCATATATAGGCCACGCACTCGACAGTCTACGAAATGGTTTACCCGATTCAATGCTGATGATACAGGCATCATTGACTTGTGTTCCCTGAGCAAAGAATCAGAAACAAGTGATCCAACAAACCAGGATTTTAGAAGTACCAATGATTTTAAGTGTGATCAAGTTTCTAGCCACCAAGTTCCCATTTCTCCTGGAGGTATTCTTCTTGCTGACTGCAACTCCCCTGTTTCCTGTGGTGCACCCTGTACAGAACTCACTCAAGGATCAGAAGACAATATGATTCCTGAAGATTTTGATAACTTTGTCGATTCTCTGGATGATATGCTGGCTCAGCCTCTACCTGAAGCACTATTATCCCCATCTGCAACTGATAATTATCAAGCTTCTGAAGATGAAATTGCTGAGGCTCGAATAAAACTTTCTTCCTTGCTTGCTATGGATTTCCATCTTTTGGTTTCCTCCAAAGACCTTAAAGAACTTGCATTGCTGTCATCCAAGCTTCAGAAGGATCCTAGCCTTGATGCTGATCAACTTTCTAAACTAAAGCTCATTGAAGAAATTCCAGTTACTGGTAAGGTTTTTTTGGAGGCCATGCAAATCAAAGAGGAAGTTAACAAATTCTTTGCAGACCTGACTTCCAGCATGGACAAGGCTACTTCACTAAGGAATGAATACAATGCATCAAAGGAGGATATTGCCATGCTACAGGTTGATATAAATTCCAGCTTATCAACCTTAGAAGAAATTGATGATCAAATTGCTAAACTTCAATCCAGACGAGCTGAGCTGAGTACTGCCCTCAAGATTAAAAGAAGGAAGTAG 1332 0.4189 MSSPPRELPEFCNVYLPEYSSDRLLIPTAFLGHFNGVVPEKAILREFSGRVWLVEVGLIGKDVYFLNGWQRFRTDNSLEEGVFLVFRYDGSHIFDFKLFGRNQCEKIETDNDQLQAQMQETEPFQQLVTPSSITPWVCPQPGKEVDQEVGKKSPFTLPRRKRKAAKLPVTTIYRPRTRQSTKWFTRFNADDTGIIDLCSLSKESETSDPTNQDFRSTNDFKCDQVSSHQVPISPGGILLADCNSPVSCGAPCTELTQGSEDNMIPEDFDNFVDSLDDMLAQPLPEALLSPSATDNYQASEDEIAEARIKLSSLLAMDFHLLVSSKDLKELALLSSKLQKDPSLDADQLSKLKLIEEIPVTGKVFLEAMQIKEEVNKFFADLTSSMDKATSLRNEYNASKEDIAMLQVDINSSLSTLEEIDDQIAKLQSRRAELSTALKIKRRK* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1531 443 Pfam B3 DNA binding domain 18 94 IPR003340 GO:0003677
Vvi12g1531 443 Coils Coil 296 316 - -
Vvi12g1531 443 PANTHER ADAPTER PROTEIN, PUTATIVE-RELATED 17 441 - -
Vvi12g1531 443 SUPERFAMILY DNA-binding pseudobarrel domain 5 104 IPR015300 -
Vvi12g1531 443 SMART B3_2 11 102 IPR003340 GO:0003677
Vvi12g1531 443 Gene3D - 5 104 IPR015300 -
Vvi12g1531 443 ProSiteProfiles B3 DNA-binding domain profile. 9 102 IPR003340 GO:0003677
Vvi12g1531 443 Coils Coil 409 443 - -
Vvi12g1531 443 CDD B3_DNA 9 99 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1531 Vvi-Chr12 22479367 22483047 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1531 8 121 REM Transcription Factor Family AT3G06220 34.646 5.43e-19 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vvi12g1531 B3 4.4e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1531 - - vvi:104881026 833.172