Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1530 ATGGAGGAGACTCAGCTGAAGCTGTATTCTTATTGGCGGAGTTCCTGCTCCTGGCTGAAATACGAGTACAAAGCAGTGAACTTGGTGAAAGGAGAGCAGTTCAGTCCAGAGTTTTCAAAGCTGAATCCTCTCAATTTTGTGCCGGCACTAGTGGATGGGGACATAGTAGTTGCTGATTCTTTTGCCATTTTGATGTATTTGGAAGAGAAGTATCCTCAACATCCATTGTTGCCTCAGGATCTACATAAAAGAGCTATCAATTACCAGGCTGCCAATATTGTTTCTGCAAACATACAGCCACTTCAGAATTTGGTTGTACTGAAATATATTGAGGAAAAGTGTGGTAGTGGTGAGAGGCTCACATGGGTCAAACATCATATTGAAAAAGGCTTTGCAGCCTTGGAGAAGCTATTAAAAGATCATGCTGGAAAATATGCGACTGGAGATGAAGTTTTCCTGGCTGATTTGTTTCTAGCACCCCAGATTCATGCTGCACTTAAACGGTTCAAAATGGACATGACTGAATTCCCCCTTTTATTAAGGTTGAATGACGCATACAATGAATTGCCAGCATTCCAAGATGCTATGCCAGAAAAACAGCCCGACTACGTCCCATCATAG 621 0.4235 MEETQLKLYSYWRSSCSWLKYEYKAVNLVKGEQFSPEFSKLNPLNFVPALVDGDIVVADSFAILMYLEEKYPQHPLLPQDLHKRAINYQAANIVSANIQPLQNLVVLKYIEEKCGSGERLTWVKHHIEKGFAALEKLLKDHAGKYATGDEVFLADLFLAPQIHAALKRFKMDMTEFPLLLRLNDAYNELPAFQDAMPEKQPDYVPS* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1530 206 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 80 205 IPR010987 -
Vvi12g1530 206 Pfam Glutathione S-transferase, N-terminal domain 14 74 IPR004045 -
Vvi12g1530 206 SUPERFAMILY GST C-terminal domain-like 75 203 IPR036282 -
Vvi12g1530 206 NCBIfam maleylacetoacetate isomerase 7 203 IPR005955 GO:0003824|GO:0005737|GO:0009072
Vvi12g1530 206 SFLD Glutathione Transferase (cytosolic) 19 181 IPR040079 -
Vvi12g1530 206 Gene3D Glutaredoxin 1 71 - -
Vvi12g1530 206 PANTHER MALEYLACETOACETATE ISOMERASE 6 202 - -
Vvi12g1530 206 SUPERFAMILY Thioredoxin-like 4 79 IPR036249 -
Vvi12g1530 206 Pfam Glutathione S-transferase, C-terminal domain 112 192 IPR004046 -
Vvi12g1530 206 FunFam Maleylacetoacetate isomerase 79 206 - -
Vvi12g1530 206 Gene3D - 77 205 - -
Vvi12g1530 206 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 4 75 IPR004045 -
Vvi12g1530 206 CDD GST_C_Zeta 81 200 IPR034330 -
Vvi12g1530 206 SFLD Main (cytGST) 19 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1530 Vvi-Chr12 22462264 22472198 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1530 3 202 Glutathione S-transferase Gene Family AT2G02380 59.524 3.21e-91 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1530 K01800 - vvi:100252270 408.297