Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1529 ATGACAAGAAAAAGAAAAAATAAATTAATTTGTATGGAGGAGAGCAAGCTGAAGCTGTATTCATCCTGGCGGAGTTCCAGCTCCTGCCGTGTCCGAATTGCCCTCAACTTGAAAGGTCTGAAATACGAGTACAAAGCAGTGAATTTGTTGAAAGGAGAGCAGTTCAGTCCAGAGTTTTCAAAGCTCAGTCCTCTCAATTATGTGCCCACGTTGGTGGATGGGGACATGATAGTTGTTGAATCTTTTGCTATTCTGATGTATCTGGAAGACAAGTATCCTCAACATCCATTGTTGCCTCCTGATCTAAAGAAAAGAGCTATCAATTACCAGGCTGCTAGTTTTGTTTCCTCAAGCATACAGCCACTTCAGAATTTGGTTGAACAGAAATATATTGCGGAAGAGGTTGGTAGTGATGAGAAGCTCTCATGGGTCAAACATCACATGGAAAAAGGCTTTGCAGCACTGGAGAAGCTCTTAAAAGACCATGCTGCAAAATATGCAAGTGGAGATGAAGTTTTCCTGGCTGACTTATTTCTAGCGCCCCAGATTCATGATGCGCTTACAAGGTTCAATGTCGACATGACTCAATTCTCTCTTCTATTGAGGTTGAATGACGCATACAATGAATTGCCAGCATTCCAAGATGCCATGCCTGAAAAACAGCCCGATTACCTTCAATCATAG 684 0.4211 MTRKRKNKLICMEESKLKLYSSWRSSSSCRVRIALNLKGLKYEYKAVNLLKGEQFSPEFSKLSPLNYVPTLVDGDMIVVESFAILMYLEDKYPQHPLLPPDLKKRAINYQAASFVSSSIQPLQNLVEQKYIAEEVGSDEKLSWVKHHMEKGFAALEKLLKDHAAKYASGDEVFLADLFLAPQIHDALTRFNVDMTQFSLLLRLNDAYNELPAFQDAMPEKQPDYLQS* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1529 227 Pfam Glutathione S-transferase, N-terminal domain 16 89 IPR004045 -
Vvi12g1529 227 SUPERFAMILY Thioredoxin-like 11 99 IPR036249 -
Vvi12g1529 227 PANTHER MALEYLACETOACETATE ISOMERASE 17 223 - -
Vvi12g1529 227 SFLD Main (cytGST) 17 189 - -
Vvi12g1529 227 SUPERFAMILY GST C-terminal domain-like 96 223 IPR036282 -
Vvi12g1529 227 NCBIfam maleylacetoacetate isomerase 18 224 IPR005955 GO:0003824|GO:0005737|GO:0009072
Vvi12g1529 227 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 101 226 IPR010987 -
Vvi12g1529 227 Gene3D Glutaredoxin 14 98 - -
Vvi12g1529 227 Gene3D - 99 226 - -
Vvi12g1529 227 CDD GST_C_Zeta 102 221 IPR034330 -
Vvi12g1529 227 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 15 96 IPR004045 -
Vvi12g1529 227 FunFam Maleylacetoacetate isomerase 100 227 - -
Vvi12g1529 227 Pfam Glutathione S-transferase, C-terminal domain 137 212 IPR004046 -
Vvi12g1529 227 FunFam Glutathione S-transferase Z1 15 99 - -
Vvi12g1529 227 SFLD Glutathione Transferase (cytosolic) 17 189 IPR040079 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1529 Vvi-Chr12 22458573 22461088 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1529 14 223 Glutathione S-transferase Gene Family AT2G02380 59.524 6.07e-92 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1529 K01800 - vvi:100257402 417.927