Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1528 ATGGATTCAAGATTAATTCTGGTCTCTCTTCTAATTGTTTTCATCCAAATTTCAGCTACATGGGCAAGGACAAACACTGATGATGCCACGGCTCTAGTAGCTCTCAAGGACTTATGGGAGAACTACCCACCCAGTTGGGTTGGCTTCGATCCGTGTGGCAGCAGTTGGGAAGGAATTGGGTGCTACAATCAACGTGTGATCTCCATAATATTAACTAGCATGGGTTTGAAGGGCGGACTGTCAGGAGACCTCGACCAGTTATCTGAATTGCAGATTCTGGATCTATCATACAACAAGAATCTAACGGGAAACATTCCAGCATCAATCGGGAGTTTGAAGAAGCTAACAAACTTAATCCTTGTTGGTTGCAGTTTCTCTGGTCCAATTCCAGATACGATAGGATCTCTAACAGAGCTGGTCTTTTTATCTCTGAATTCTAATAGCTTCAGTGGAGGCATACCACCTTCCATTGGTAATCTATCTAAACTCTATTGGCTGGATCTAGCTGACAACCAGCTCACTGGAACCATTCCAATCTCTAATGGGAGTACACCTGGTCTGGATAAGCTCACCCACACCAAGCATTTCCACTTTGGAAAGAACCGGCTCTCTGGCTCAATCCCCCCTAAACTTTTCAGCTCAAACATGATTCTGATACACTTGCTTCTTGAGAGCAACCGGCTAACTGGCAGCATCCCTTCCACACTAGGACTTCTGAAGACGTTGGAGGTGGTACGCCTTGATGGAAATTCATTAAGTGGGCCTGTTCCTTCAAACCTCAACAATCTCACAGAAGTCAAGGACCTGTTTTTGTCCAACAATAAGTTGACTGGCACTGTGCCTGATCTTACCGGCATGAACAGCCTCAACTACATGGACATGAGCAACAACAGTTTTGACGTGTCAAACGTTCCTTCATGGTTGTCAACTTTGCAGTCTTTGACAACATTAACAATGGAGAACACAAACCTTAAAGGAGCTATCCCCGCCTCCCTCTTCAGCCTTCCCCAATTACAGACTGTGTCTCTAAGGAACAACATAATCAATGGCACCTTAGATTTTGGTGCTGGCTATAGCAGCCAACTACAACTCGTTGATTTGCAGAAAAATTACATTGTTGCTTTTACAGAAAGAGCAGGACATGATGTTGAGATAATACTTGTAGAAAACCCAATTTGTCTTGAAGGACCAAAGAATGAAAAATACTGCATGACTTCCCAACCCGACTTCTCATATTCAACACCTCCTAACAACTGTGTGCCCTCTGTCTGTAGTTCAGATCAAATTCCCAGCCCCAACTGTATATGTGCTTATCCATACATGGGAACCCTTGTCTTCAGAGCTCCTTCCTTTTCAAACTTGGGAAACTCAAGCTACTACATATCTCTTGAGCAGCGTCTGATGCAATCTTTTCAGTCCCAGCAACTTCCTGTAGACTCGGTTTTCTTGGCTGATCTAATGAAGGACTCAAATAATTACCTTCAGGTAAGCCTGAAAGTCTTTCCACATGGCCGAGATCGTTTCAATAGAACAGGGATTTCTATGGTTGGGTTTGCGCTCAGCAACCAGACTTTCAAGCCCCCATCCACTTTTGGGCCATTCTACTTCAATGGTGAGCAGTATCAATACTTTGAAGAGGTATCTCTATCTCTGGAACCAAATAAGTCATCAAATACAGGCATTATCATTGGAGCAGCAGTTGGTGGTTCCTTGCTTGTGCTATTATTACTCTTTGCAGGGGTTTATGCTTTTCGTCAAAAGAGGAGGGCAGAAAGGGCTACTGAACAGAGCAACCCTTTTGCAAACTGGGATGAGAGTAAAGGCAGTGGTGGTATACCTCAGTTAAAAGGGGCAAGACGGTTCACATTTGAAGAGATCAAGAAATGCACCAACAATTTTTCTGACGTCAATGATGTTGGATCTGGAGGTTATGGGAAGGTTTATAGAGCAACCCTTCCCACTGGGCAAATGGTTGCCATCAAACGAGCTAAACAGGAATCAATGCAGGGTGGTCTGGAGTTCAAAACAGAAATTGAGCTTCTATCAAGAGTTCATCATAAGAATGTGGTCAGCCTTATCGGTTTCTGCTTTCAGCTGGGTGAACAGATACTGATATATGAGTATGTCCCCAATGGTAGTCTCAAGGAATCTCTTTCAGGGAGGTCAGGAATCAGGTTGGACTGGAGGAGAAGACTCAAGGTAGCACTTGGTTCAGCCAGAGGCCTGGCATATTTGCATGAGCTTGCAGATCCTCCCATCATCCATAGGGACATCAAATCAAACAACATTCTATTGGACGAACACTTAAATGCTAAAGTTGGCGATTTTGGTCTCTGCAAGCTTTTGGCTGACAGTGAGAAGGGTCATGTTACCACTCAAGTCAAAGGGACAATGGGCTATATGGATCCGGAATATTACATGTCCCAACAGTTGACTGAAAAGAGTGATGTTTACAGCTTTGGAGTGCTAATGTTGGAGCTAATATCAGCAAGAAAGCCGATAGAGCGAGGGAAATACATCGTAAAAGAGGTGAAGATAGCGATGGATAAGACAAAAGATCTATACAACCTTCAGGGCCTTCTTGACCCAACCCTGGGCACAACACTTGGAGGGTTCAACAAGTTTGTGGATCTAGCACTGAGATGTGTTGAAGAATCAGGAGCTGATAGACCTACAATGGGTGAGGTGGTGAAAGAGATTGAAAACATCATGCAGCTGGCTGGTCTGAATCCCATTACTGAATCATCCTCTGCTTCAGCAAGCTATGAGGAGTCAAGTACGGGTACTTCCAGCCATCCCTATGGCAGTAATTCCGCCTTTGATACTACAGCTCTCAAGAGTTTGTTGAAGAACCTCCCGTTCACTTGGGTGGGCGCTGATCCCTGTGTCAACGGTTGGGAGGGAATTGGTTGCTCCAATGGACGTGTGATCTCCATGGATCTATCTTACAACAAGGGTCTAACAGGAAATATTCCAGCATCAATTGGGAGTTTAAAGAGCCTAACAAACTTAATCCTTATGGGTTGCAGTTTCTCTGGTCAAATTCCAGATACAATAGGATCTCTAACAAATCTAGTCGTTTTATCTCTGAATTCTAATAGCTTCAGTGGAGTCATACCGCCTTCCATTGGTAATCTATATAATCTCAATTGGCTGGATATAACTGAAAACCAAATCACTGGAACCATTCCAATCTCTAATGGGGGTACACCTGGTCTGGATATGCTCACCCAAATGAAACATTTCCACTTTGGGAAGAACCGGCTCTCTGGCCCAATCCCCCCTCAACTTTTCAGCTCAAAAATGACAATGATACACTTGCTTCTTGACAACAACCATCTTACTGGCAGTATCCCTCCCACACTAGGACTTGCGACAACTTTGGAGATCATCCGCCTTGATAGGAATTTATTAAGCGGACCTGTTCCTTCAAACCTCAACAATCTTACAAGCCTCACTGAGCTGTTGCTGTCCAACAATAATTTGACTGGCACTGTGCCTAATCTTACAGGCATGAACCACCTCAGCTACCTGGACATGAGCCAAAATAATTTTGAAGTGTCAGACTTTCCTTCATGGTTTTCAACTTTACTGTCTTTGACAACATTAACGATGGAGTTCACAAAACTTACGGGAGATATTCCTGTCGCCCTCTTCAGCCTTCCCCAATTACAGACTGTGAAACTAAGGAACAACCAGATCACCGGCACACTAGAGTTTGGTTCTGCCTATAACAGCCATCTGCGACTCGTGGATTTGCAGAAAAATTACATTAGTGAATTTAAACCAGGACTAGAATATGAATTTAAGATAATACTTGTAGGTAACCCGATGTGTCAGGATGAAGGTAATGAAAAATACTGCACGCCTGCCCAGCCCAACTCCTCATATTCAACACAACCAAAGCACAGCTGTATCATCCCTTTCTGTAGTTCAGATTTAATTCTCGGCCCCAACTGTTCATGTGCTTATCCATACATAGGAACCCTTGTCTTCAGAGCTCCTTCTTTTTCAAACTCGGGAGACTCAAGTGATTACAAATCAATTGAGCAGTTCCTGATGCAACTTTTTCGGTCCCTGCAACTTCCTGTAGACACAGTTTCCCTGAGTAATTCGACCATGGTGGATGATTACCTTAAAGTTAACCTGAAAGTCTTTCCACAGGGCCAAGATCGTTTCAATAGAACAGGAATTTTTTTGGTTGGCTTTGCTCTCAGCAACCAAACTTCAGCATTCTCCTTCATTGCTGATCCGTATCAACACTTTGAAGAGGTACCTTCACCCCCGGGAGCAAAGAAGTCATCAAATACCGGCATTATTGTTGGAGCAACAACAGGTGGTTCCTTCCTTGCGCTATTATTACTCTTTGCAGGGGTTTATGCTTTTTCTCAAAAGAGGAGAGCAGAAAGAGCTACTAAACAGAGCAATCCTTTTGCAAAGTGGGATCAGAGAAAAGGCAGTGGTGGTATTCCTCAGTTAAAAGGAGCAAGACAGTTCACATTTGAAGAGATCAAGAAATGCACCAACAATTTTTCTGAAGCCAATAATGTTGGATCTGGAGGCTATGGGAAGGTGTATAGAGGAATCCTTCCCACTGGGCAAATGGTTGCTATCAAACGAGCTAAACAGGAATCAATGCAGGGTGGTCTGGAGTTCAAAACTGAACTTGAGCTTCTATCAAGAGTTCATCATAAAAATGTTGTCGGCCTTGTAGGTTTCTGCTTTGAGCACGGTGAACAGATGCTGGTATATGAGTTTGTCCCCAATGGTAGTCTCAAGGAATCTCTTTCAGGGAAGTCAGGAATCAGGTTGGACTGGAGGAAAAGACTCAAGGTAGCACTTTGTTCAGCCAGAGGTCTGGCTTATCTGCATGAGCTTGCTGAACCTCCCATCATCCATAGGGACATCAAATCAAACAACATTTTATTGGATGAACGCTTAAATGCAAAAGTTGCTGATTTTGGTCTCTGCAAGCTTTTGGCTGACAGTGAGAAGGGTCATGTTACCACTCAAGTCAAAGGGACAATGGGCTATTTGGATCCGGAATATTACATGTCCCAACAATTGACTGAAAAGAGTGATGTTTACAGCTTTGGAGTGCTAATGTTGGAGCTAATATCAGCAAGAAAGCCAATAGAGCGAGGGAAATACATCGTAAAAGAGGTGAAGATAGAGATGGATAAGACAAAAGATCTATACAACCTTCAGGGCCTTCTTGACCCAACCCTGGGCACAACACTTGGAGGGTTCAACAAGTTTGTGGATCTAGCACTGAGATGTGTTGAAGAATCAGGAGCTGATAGACCTAGAATGGGTGAGGTGGTGAAAGAGATTGAAAACATCATGCAGCTGGCTGGTCTGAATCCCATTATTGAATCATCCTCTGCTTCAGCAAGCTATGAGGAGTCAAGTACGGGTACTTCCAGCCATCCCTATGGCAATAATTCCGCTTTTGATAATAGTGTGGGCTATTCCCCTTCCACAGTACAGCCCAAGTGA 5499 0.4372 MDSRLILVSLLIVFIQISATWARTNTDDATALVALKDLWENYPPSWVGFDPCGSSWEGIGCYNQRVISIILTSMGLKGGLSGDLDQLSELQILDLSYNKNLTGNIPASIGSLKKLTNLILVGCSFSGPIPDTIGSLTELVFLSLNSNSFSGGIPPSIGNLSKLYWLDLADNQLTGTIPISNGSTPGLDKLTHTKHFHFGKNRLSGSIPPKLFSSNMILIHLLLESNRLTGSIPSTLGLLKTLEVVRLDGNSLSGPVPSNLNNLTEVKDLFLSNNKLTGTVPDLTGMNSLNYMDMSNNSFDVSNVPSWLSTLQSLTTLTMENTNLKGAIPASLFSLPQLQTVSLRNNIINGTLDFGAGYSSQLQLVDLQKNYIVAFTERAGHDVEIILVENPICLEGPKNEKYCMTSQPDFSYSTPPNNCVPSVCSSDQIPSPNCICAYPYMGTLVFRAPSFSNLGNSSYYISLEQRLMQSFQSQQLPVDSVFLADLMKDSNNYLQVSLKVFPHGRDRFNRTGISMVGFALSNQTFKPPSTFGPFYFNGEQYQYFEEVSLSLEPNKSSNTGIIIGAAVGGSLLVLLLLFAGVYAFRQKRRAERATEQSNPFANWDESKGSGGIPQLKGARRFTFEEIKKCTNNFSDVNDVGSGGYGKVYRATLPTGQMVAIKRAKQESMQGGLEFKTEIELLSRVHHKNVVSLIGFCFQLGEQILIYEYVPNGSLKESLSGRSGIRLDWRRRLKVALGSARGLAYLHELADPPIIHRDIKSNNILLDEHLNAKVGDFGLCKLLADSEKGHVTTQVKGTMGYMDPEYYMSQQLTEKSDVYSFGVLMLELISARKPIERGKYIVKEVKIAMDKTKDLYNLQGLLDPTLGTTLGGFNKFVDLALRCVEESGADRPTMGEVVKEIENIMQLAGLNPITESSSASASYEESSTGTSSHPYGSNSAFDTTALKSLLKNLPFTWVGADPCVNGWEGIGCSNGRVISMDLSYNKGLTGNIPASIGSLKSLTNLILMGCSFSGQIPDTIGSLTNLVVLSLNSNSFSGVIPPSIGNLYNLNWLDITENQITGTIPISNGGTPGLDMLTQMKHFHFGKNRLSGPIPPQLFSSKMTMIHLLLDNNHLTGSIPPTLGLATTLEIIRLDRNLLSGPVPSNLNNLTSLTELLLSNNNLTGTVPNLTGMNHLSYLDMSQNNFEVSDFPSWFSTLLSLTTLTMEFTKLTGDIPVALFSLPQLQTVKLRNNQITGTLEFGSAYNSHLRLVDLQKNYISEFKPGLEYEFKIILVGNPMCQDEGNEKYCTPAQPNSSYSTQPKHSCIIPFCSSDLILGPNCSCAYPYIGTLVFRAPSFSNSGDSSDYKSIEQFLMQLFRSLQLPVDTVSLSNSTMVDDYLKVNLKVFPQGQDRFNRTGIFLVGFALSNQTSAFSFIADPYQHFEEVPSPPGAKKSSNTGIIVGATTGGSFLALLLLFAGVYAFSQKRRAERATKQSNPFAKWDQRKGSGGIPQLKGARQFTFEEIKKCTNNFSEANNVGSGGYGKVYRGILPTGQMVAIKRAKQESMQGGLEFKTELELLSRVHHKNVVGLVGFCFEHGEQMLVYEFVPNGSLKESLSGKSGIRLDWRKRLKVALCSARGLAYLHELAEPPIIHRDIKSNNILLDERLNAKVADFGLCKLLADSEKGHVTTQVKGTMGYLDPEYYMSQQLTEKSDVYSFGVLMLELISARKPIERGKYIVKEVKIEMDKTKDLYNLQGLLDPTLGTTLGGFNKFVDLALRCVEESGADRPRMGEVVKEIENIMQLAGLNPIIESSSASASYEESSTGTSSHPYGNNSAFDNSVGYSPSTVQPK* 1833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1528 1832 SMART serkin_6 1511 1782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1528 1832 SMART serkin_6 633 904 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1528 1832 SUPERFAMILY Protein kinase-like (PK-like) 1497 1807 IPR011009 -
Vvi12g1528 1832 Gene3D Ribonuclease Inhibitor 182 283 IPR032675 -
Vvi12g1528 1832 Gene3D Transferase(Phosphotransferase) domain 1 709 918 - -
Vvi12g1528 1832 Gene3D Transferase(Phosphotransferase) domain 1 1587 1791 - -
Vvi12g1528 1832 ProSitePatterns Protein kinases ATP-binding region signature. 639 661 IPR017441 GO:0005524
Vvi12g1528 1832 FunFam Leucine-rich repeat protein kinase family protein 183 282 - -
Vvi12g1528 1832 CDD STKc_IRAK 1517 1781 - -
Vvi12g1528 1832 Gene3D Phosphorylase Kinase; domain 1 607 708 - -
Vvi12g1528 1832 Gene3D Phosphorylase Kinase; domain 1 1484 1586 - -
Vvi12g1528 1832 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 1587 1794 - -
Vvi12g1528 1832 MobiDBLite consensus disorder prediction 1796 1832 - -
Vvi12g1528 1832 FunFam Leucine-rich repeat protein kinase family protein 1476 1586 - -
Vvi12g1528 1832 ProSiteProfiles Protein kinase domain profile. 1511 1791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1528 1832 FunFam Predicted protein 1071 1289 - -
Vvi12g1528 1832 ProSitePatterns Serine/Threonine protein kinases active-site signature. 753 765 IPR008271 GO:0004672|GO:0006468
Vvi12g1528 1832 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 709 917 - -
Vvi12g1528 1832 Gene3D Ribonuclease Inhibitor 284 407 IPR032675 -
Vvi12g1528 1832 Gene3D Ribonuclease Inhibitor 1170 1306 IPR032675 -
Vvi12g1528 1832 SMART LRR_typ_2 263 287 IPR003591 -
Vvi12g1528 1832 SMART LRR_typ_2 1149 1172 IPR003591 -
Vvi12g1528 1832 SMART LRR_typ_2 1076 1100 IPR003591 -
Vvi12g1528 1832 SMART LRR_typ_2 136 160 IPR003591 -
Vvi12g1528 1832 SMART LRR_typ_2 1022 1046 IPR003591 -
Vvi12g1528 1832 SMART LRR_typ_2 87 108 IPR003591 -
Vvi12g1528 1832 SMART LRR_typ_2 311 335 IPR003591 -
Vvi12g1528 1832 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 972 1063 - -
Vvi12g1528 1832 FunFam Leucine-rich repeat protein kinase family protein 599 708 - -
Vvi12g1528 1832 Gene3D Ribonuclease Inhibitor 1101 1169 IPR032675 -
Vvi12g1528 1832 SUPERFAMILY L domain-like 45 376 - -
Vvi12g1528 1832 Gene3D Ribonuclease Inhibitor 941 1100 IPR032675 -
Vvi12g1528 1832 Gene3D Ribonuclease Inhibitor 25 181 IPR032675 -
Vvi12g1528 1832 Pfam Protein tyrosine and serine/threonine kinase 637 899 IPR001245 GO:0004672|GO:0006468
Vvi12g1528 1832 Pfam Protein tyrosine and serine/threonine kinase 1515 1777 IPR001245 GO:0004672|GO:0006468
Vvi12g1528 1832 FunFam Leucine-rich repeat family protein 27 182 - -
Vvi12g1528 1832 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1631 1643 IPR008271 GO:0004672|GO:0006468
Vvi12g1528 1832 ProSiteProfiles Protein kinase domain profile. 633 904 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1528 1832 CDD STKc_IRAK 639 903 - -
Vvi12g1528 1832 ProSiteProfiles Leucine-rich repeat profile. 1151 1173 IPR001611 GO:0005515
Vvi12g1528 1832 ProSitePatterns Protein kinases ATP-binding region signature. 1517 1539 IPR017441 GO:0005524
Vvi12g1528 1832 PANTHER RECEPTOR-LIKE PROTEIN 55 34 903 - -
Vvi12g1528 1832 SUPERFAMILY Protein kinase-like (PK-like) 619 931 IPR011009 -
Vvi12g1528 1832 SUPERFAMILY L domain-like 966 1263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1528 Vvi-Chr12 22417127 22432647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1528 10 938 Receptor kinase-like Gene Family AT5G49760 61.028 0.0 1086
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Vvi12g1528 PK_Tyr_Ser-Thr 5.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1528 - - vvi:100262527 1815.82