Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1526 ATGGCTGAATTGGAAGCGGATAAGAAGAAGGAAGCTGTGTGTGTGACAGGAGCCAATGGCTTCATTGGGTCTTGGTTGGTTCGGACCCTGGTGGAGCATGGCTACACCACCATCCACGCCTCCATCTTCCCCGGCTCCGACGCCTCGCACCTCTTCTCTCTCCCGGGCGCCGCCGCCGCCGATATCGTCGTGTACGAGGCTGACCTCCTCGACGCCGAAGCGGTGGCCAGGGCGGTGGAGGGCTGCACCGGGGTGTTCCACGTGGCGTCCCCCTGCAGTCTCGAGGACCCTAAGGATCCTGAGAAGGAGCTGCTAATGCCGGCGGTGGAAGGGACAAAGAATGTTCTGGAAGCTGCTAGAAGGTTCCAGGTGAGGCGCGTGGTGCTCACCTCATCCATTTCGGCCTTGGTCCCCAACCCCTCTTGGCCCCCCAACATTCCCTTCAACGAGACCTCCTGGACTGACCTCCATTACTGCAAATCTCGCCAGAAATGGTATCCAGTGTCGAAGACACTAGCAGAAAAAGCAGCATGGGAATTTGCAGGGAAACATGGAATAGATGTAGTGGCTATCCATCCAGCCACATGTCTCGGCGAACTGTTACAACCAAGATTGAATGCGAGCTGTGCTGTATTGCAGCAGCTGCTCGAAGGATCAACAGAAACTCAGGAATATCACTGGCTGGGGGCTGTGCATGTTAAAGATGTAGCGAAGGCACAAGTATTGCTATTTGAGACTCCTGCTGCTTCTGGTAGATATCTCTGCACCGATGGTATCTATCAGTTTGCCGATTTTGCTGAGAGAGTCTCCAAACTCTTCCCAGAGTTTCCAGTTCACAGATTTATTGGAGAAACCCAACCAGGCATGATGGCTTGCAAAGATGCGGCAAAAAGATTGATAGATCTGGGACTAGTCTTTACACCAGTTGAAGATGCTGTTAAGGATGCGGTGGAGAGCTTGAAAGCAAAAGGCTTCCTGGAGCAGGGAAAGAAGCAATCTTAG 1002 0.5329 MAELEADKKKEAVCVTGANGFIGSWLVRTLVEHGYTTIHASIFPGSDASHLFSLPGAAAADIVVYEADLLDAEAVARAVEGCTGVFHVASPCSLEDPKDPEKELLMPAVEGTKNVLEAARRFQVRRVVLTSSISALVPNPSWPPNIPFNETSWTDLHYCKSRQKWYPVSKTLAEKAAWEFAGKHGIDVVAIHPATCLGELLQPRLNASCAVLQQLLEGSTETQEYHWLGAVHVKDVAKAQVLLFETPAASGRYLCTDGIYQFADFAERVSKLFPEFPVHRFIGETQPGMMACKDAAKRLIDLGLVFTPVEDAVKDAVESLKAKGFLEQGKKQS* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1526 333 FunFam Cinnamoyl-CoA reductase 1 6 333 - -
Vvi12g1526 333 Pfam NAD dependent epimerase/dehydratase family 13 249 IPR001509 -
Vvi12g1526 333 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 11 320 IPR036291 -
Vvi12g1526 333 CDD FR_SDR_e 13 304 - -
Vvi12g1526 333 Gene3D - 3 333 - -
Vvi12g1526 333 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 11 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1526 Vvi-Chr12 22397988 22403159 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1526 10 326 Monolignol Biosynthesis Gene Families AT2G02400 72.871 0.0 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1526 - - vvi:100245372 674.47