Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1522 ATGGCAATTGCAGCCAACATGAGCCAAGAAGACAACAAGGATGAGCATGAACATGACATGGTGATGCCCGGCTTTCGCTTCCACCCTACCGAGGAAGAACTTGTCGAATTCTATCTTCGCCGTAAGGTTGAGGGCAAGCGCTTCAACGTTGAACTCATTACCTCTCTAGATCTCTATCGCTATGACCCCTGGGAGCTGCCTGCCCTGGCTGCAATTGGAGAGAAGGAATGGTTCTTCTATGTGCCCAGAGACCGCAAGTATCGAAACGGGGATCGCCCCAACCGGGTCACCACTTCTGGCTATTGGAAGGCAACAGGAGCTGATCGGATGATCCGGACCGAGAACTTCCGCCCAATTGGCCTGAAGAAGACTCTTGTTTTCTACTCTGGGAAGGCTCCTAAAGGCATCCGAACAAGCTGGATCATGAACGAGTACCGCTTGCCCCAACAGGAAACCGAGCGCAGCCAAAAGGCTGAAATATCGCTTTGTCGCGTGTATAAGAGAGCTGGGGTTGAAGACCACCCTTCACTCCCTCGTTCTCTTCCGTCCAGGCCATCATCATCGAGAGGATTACAAGCTGATAAGAGGCAGCAAGATGCAGCTCAGCATGCCATTGAGAGGTTTCAGGCCTTTGGAGGACAATCTCAGCAAGTGGAAATGGAGAAAATGATCGGTGAAAGTGAGGGAAGCAGCAGTACTGATGTCACCACTGCTCTTGGGCTTTCCCAGCAGAATGCCTACGGTGCAATACCTGCACTTAGCGCCACCCTCGCGCCACCAGCTCCTGAGGAAGAGGATAGGCTTCTACTGCACCACTCAAAACAAGCTTGCTCTCTGGTACCGCCTGCCTGCACCACCCTCTTTACAGGCTCATCTTCCTTGCCGCCGCACGCAGTCGATGATCTCCATAGGCTAGTCAACTACCAACAAGCTTCAATCAATCAGCAGCAACAATATCATAACAATCCTAATCAACCCTCTCACCAGTTCTCAACTCTACCAGTACCGCAATCATCACAGTCGTTAGCCCTCAATACATTGCCAGGCTCACTTCAAGCTGCCTTCTCCGACAGACTGTGGGAGTGGAATCCAATCCCAGAGGCAAGCAGAGATTACAACAGCCCCTTCAAGTAA 1134 0.5168 MAIAANMSQEDNKDEHEHDMVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITSLDLYRYDPWELPALAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENFRPIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPQQETERSQKAEISLCRVYKRAGVEDHPSLPRSLPSRPSSSRGLQADKRQQDAAQHAIERFQAFGGQSQQVEMEKMIGESEGSSSTDVTTALGLSQQNAYGAIPALSATLAPPAPEEEDRLLLHHSKQACSLVPPACTTLFTGSSSLPPHAVDDLHRLVNYQQASINQQQQYHNNPNQPSHQFSTLPVPQSSQSLALNTLPGSLQAAFSDRLWEWNPIPEASRDYNSPFK* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1522 377 Pfam No apical meristem (NAM) protein 23 147 IPR003441 GO:0003677|GO:0006355
Vvi12g1522 377 Gene3D NAC domain 30 171 IPR036093 GO:0003677|GO:0006355
Vvi12g1522 377 FunFam NAC domain-containing protein 35 30 171 - -
Vvi12g1522 377 MobiDBLite consensus disorder prediction 317 337 - -
Vvi12g1522 377 MobiDBLite consensus disorder prediction 180 195 - -
Vvi12g1522 377 ProSiteProfiles NAC domain profile. 21 168 IPR003441 GO:0003677|GO:0006355
Vvi12g1522 377 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 18 291 - -
Vvi12g1522 377 SUPERFAMILY NAC domain 21 167 IPR036093 GO:0003677|GO:0006355
Vvi12g1522 377 MobiDBLite consensus disorder prediction 173 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1522 Vvi-Chr12 22330300 22332139 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1522 20 377 NAC Transcription Factor Family AT2G02450 51.407 3.01e-119 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi12g1522 NAM 8.4e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1522 - - vvi:100248807 727.628