Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1518 ATGGAGGGACTGCCACCACACCCGGTACCCAGAACTGTTGAAGAGGTCTTCAGCGATTACAGAGGCAGACGTGCCGGCTTGATCAAGGCCCTCACCACCGAAGTTGAAAAGTTCTACCAGCAGTGCGATCCTGAGAAGGAGAACTTGTGTCTGTATGGACTTCCAAATGAGACATGGGAAGTTAACCTGCCTGTTGAGGAGGTACCTCCTGAGCTTCCAGAACCAGCATTAGGTATAAACTTTGCTAGGGATGGGATGCAAGAGAAAGACTGGTTATCACTGGTTGCTGTGCACAGTGATTCATGGTTGCTTGCTGTTGCATTCTATTTTGGTGCCCGCTTTGGGTTTGGTAAGAGTGAAAGGAAGAGGCTTTTCCAGATGATAAACGAGCTTCCAACCATATTTGAAGTTGTGACAGGAGTTAAGCAACAAAGAGATATGTCTGGTAATCACAACAACAGCAACAAAAGCAAATCAAGTGGGAAGATGTCTCGGCAACCTGAACCCCAGACCAAGGGAGTAAAGGTGTCTCCTCCATCCAAGGAAGAAGACGAGAGTGGGGACGAAGATGCTGAAGATGATGAACAAGGAGCCATCTGTGGAGCTTGTGGGGATAACTATGCTAATGATGAATTCTGGATTTGCTGTGACGTGTGTGAGAAATGGTTCCATGGCAAATGTGTTAAGATTACACCTGCAAAGGCTGAGCATATCAAGCAATACAAGTGCCCGGGTTGCAGTAACAAAAGGGCTAGAGTTTAA 762 0.4685 MEGLPPHPVPRTVEEVFSDYRGRRAGLIKALTTEVEKFYQQCDPEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKSERKRLFQMINELPTIFEVVTGVKQQRDMSGNHNNSNKSKSSGKMSRQPEPQTKGVKVSPPSKEEDESGDEDAEDDEQGAICGACGDNYANDEFWICCDVCEKWFHGKCVKITPAKAEHIKQYKCPGCSNKRARV* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1518 253 MobiDBLite consensus disorder prediction 142 194 - -
Vvi12g1518 253 ProSiteProfiles Zinc finger PHD-type profile. 197 249 IPR019787 -
Vvi12g1518 253 CDD PHD_AL_plant 200 249 IPR044104 -
Vvi12g1518 253 SMART PHD_3 199 247 IPR001965 -
Vvi12g1518 253 FunFam PHD finger alfin-like protein 192 248 - -
Vvi12g1518 253 ProSitePatterns Zinc finger PHD-type signature. 200 246 IPR019786 -
Vvi12g1518 253 MobiDBLite consensus disorder prediction 143 173 - -
Vvi12g1518 253 SUPERFAMILY FYVE/PHD zinc finger 189 250 IPR011011 -
Vvi12g1518 253 Pfam PHD-finger 199 249 IPR019787 -
Vvi12g1518 253 Pfam Alfin 12 140 IPR021998 GO:0006355|GO:0042393
Vvi12g1518 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 248 IPR013083 -
Vvi12g1518 253 PANTHER CPG BINDING PROTEIN 10 252 IPR045104 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1518 Vvi-Chr12 22289383 22295747 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1518 1 250 Alfin-like Transcription Factor Family AT1G14510 78.088 1.46e-126 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Vvi12g1518 Alfin 7.6e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1518 - - vvi:100259036 478.018