Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1516 ATGTCAGAAATGGTTGTGATGGATCCCAGCAACTTCCACTTGCAGAAGAAGCAGCTCACTCAAATTCGCAAGGCAGCTCGGGTCTTGCGAGATCCAGGAACCACGTCTTCCTGGCGGTCTCCGCTCAGCACCGCCAGATCTCTATCCCTCTCCGCTGCGACGCCCCCGCCACCTCAGCCGCCGCCTCCACCGCCCCGGCCGCCGGAGGAGTCGAGGAGAGTGTTTCTATACAATTGGAGGAGTGCTAGTCAGAAGGCGAAATCGTCGGTGAACGGTGAGAACGAGGACGATGAAGACGGCGTTGATGGATCGAGCGTGGATGACAGCTTGAGCGATTGGCGGAATGGCGTGGATTCCAAGAGCGACACCTACATTGGCGGCCGGCGGCACCGGCGGCACCACGCTTCGATGATCTTCAGATGCAGAGATGCGAATCTGGTGGCAATGGGCAGACCTAGTGGGATTAAGAAGAAAAAGGGCAGCAAGAATGTACACTCCATTGCTTTGTTGAGACACCAGCAGCAGCAGCAGCAGCTCAACACTGCTCGCTCCGGCAATTCGAAGCGATTGCTGGAGGGGATTTTAGGCCGGGACGACTCAGTGGAGCAGTCGGATGACACTGAAGAGTACTACAATTCCGAGGATTTCCGGAGAATTTGCGAGGCCTCTCCATTGCTGTCAAGGCTGAGGCAAAGGAATTGGTCTCGGTCCTCATCTAGATTGCTGAGGAGCAAACGAAAAGATGACTCTTCTTATTCGTACAGTACGCCTGCATTGTCCACTAGCTCTTATAATCCGTATGGCAATCGAAACCCCAGTACTGTTGAGTCCTGGGATGGGACTACAGCCTCCCTACACGATGGGGATGATGAGGTAGATGATCAGTTGGATTTGCCGGGCCGGCAGGGATGTGGGATTCCTTGTTACTGGTCTAGGAGGTCAACACCAAGACACAGAGGGATATGTGGGAGTGGGAGCTGTGACTCCCCTTCGCTTTCTGATACTATAAGGAGAAAAGGAAGTAGCATGTTGTGTGGGAGTCAGACCATATACCCCAGGCGCCATGGGCTGCCGTTGGGTTCCAAGAAGAGGAGAAGTGTTTCAATGACTCCTCAGGGTCTGCTCCCATTGCTGACCAACAGTTGTGATGGCCATGGAGGGTCATCTATGGGAACTGGGCGAAGTGATGATGAGCTTTCTACAAATTTTGGGGAGCTAGATTTAGAGGCCTTGAGTAGGTTGGATGGGAGGAGGTGGTCTTCGAGTTGTAGGAGTCAAGAGGCTATGGAGCTTGTGGCTCTAAATGGGGAGAGGGAAGAGGAAGGTAGCCCTGAAAATGTTAGGAGCTTGAGTCAGAAATATAGGCCAATGTTCTTTGATGAATTGATTGGTCAGAATATTGTTGTTCAGTCCCTTGTCAATGCCATTTCCAGGGGAAGGATTGCCCCTGTATATCTTTTCCAGGGTCCCCGTGGGACAGGGAAAACATCCACAGCTAGGATTTTCACTGCTGCTTTGAATTGTTTGGCAGTTGGAGAAACTAAGCCATGTGGGATCTGCAGGGAATGCAGTGACTTCATATCTGGAAAGAGCAGGCATTTTAGGGAAATTGATGGCACCAATAAGAAGGGAATGGACAGAATGAGGTACCTTTTGAAAACCATGCCATTTGGAACTCCATCGCCTCTTTCACCATACAAGGTTTTTGTTATTGATGAGTGCCATTTATTGCCCTCTAAGACTTGGCTTGCTTTTCTCAAATTTCTTGAGGAACCGCCACCACAAGTTGTGTTCATATTCATAACACCTGATCTTGAAAACGTGCCTCGTACTGTACTTTCACGGTGTCAGAAATACCTTTTCAACAAAATCAAAGAAGGTGATATTGTTGCCAGGTTGAGGAAAATTTCTGATGACGAGAATCTGGATGTTGAATCAGATGCATTGGAGTTGATTGCCTTAAATGCTGATGGTTCCCTTCGAGATGCAGAAACTATGTTAGACCAATTGAGTTTGCTGGGGAAGAGAATCACTACGTCTCTTGTAAATGACCTTGTGGGTGTTGTTTCAGATGAGAAACTACTGGAACTTTTGGAGTTAGCCATGTCATCAGACACTGCAGAAACAGTGAAAAGAGCCAGAGAGCTAATGGACTCTGGAGTTGATCCAATAGTTTTGATGTCTCAATTGGCCAGCCTTATTATGGATATCATTGCTGGAACATATCACATTGTTGATGCCCAACAAAGCGATTCATTCTTTGGGGGACGAAGTCTGACAGAGGCAGAAATGGATAGATTAAAGCATGCCTTGAAGCTTCTCTCAGAGGCTGAGAAACAACTAAGGGTTTCAAGTGAACGTTCAACATGGTTTACGGCAACTCTCTTACAGCTTGGTTCCCCTTCACCTGATCCTACTCTGTCTGGCAGCAGTAGGAGGCAGAGCTCAAAGACAACTGAGGATGATCCATCAAGTGCTTCTAGAGATGCTACTATTGTTCACAAGCAGAAGCCTAATGCTCACCATATGCCTCGGAAATCATTTTCTCCTATTTCCATGCCTAAATCGGCTGAAAAAAATTCCACCCATCAGGGGGATTTATTGTCCCTAGTTGATGGTTTTAATTTCAATGCCAAGCCTGTGCACAGTCAATTTAGGAATAGTGGTGCCTCTGCTTCCTCACATGATGATGTTATGATGGGGAATCTGGTCTTTAGAAGCATTAATGCAGATAAGTTGGATGATATCTGGGAGCGGTGTATTGAGAGGTGCCATTCAAAGACACTGAGGCAGCTGCTACACGCTCATGGAAAGCTTGTATCAATCTCTGAAGCTGAAGGTGGTCTGGTTGCTTATGTTGCATTTCAGGATGAAGATATTAAATGTAGAGCTGAGAGGTTTCTGAGTAGTATCACAAACTCAATTGAGATAGTTATGAGAAGTAATGTAGAAGTTAAAATAATCCTCTTGCCAGATGGTGAAATTTCTATGAATATGAAAGCAGTTGGGTTGCCAGATACTTTGGGCCTGAAGCAAAGGGAAACAACTGCAGCAGTCGAAGGGGAAAGAAAAGCATTCAGCATGAAAGGAATAGATTCAGATCTAGACTCCTCACATCAGGAGCTGCTTAAAGTATCCAGAGGAAGCTTTAATGATTCTGAAGGTAAGCTGAGAGGTGGATCACGAGATCCTTCTAATTGTTCTCCACTGCTAGATAGAACATTTGGACCTACAGATGAATTGGCTGAAGGGCACATTGAAAGAAGTAGTACAAAAGAGAGGAATCAGGAGATTCCAATGCATAGGATTGACTCCATAATTCGCGAACAGAGATTAGAAACTGCATGGTTGCAGGTTGCAGAGAAAGGCACACCTAGGTCGATGAGTCGGTTGAAACCTGAGAAGAATCAAATCCTGCCCCAAGATGGTACCTATCGTCAAAATCAAGTTGAATCCATGAATTCAGTAGGTGTGCCCTCTCAGAAATGGGAAGATGAACTAAACCATGAAATCAAAGTTTTGAAGATCAATGATAGAAGGGCCCTTCAGAAGGACCCAGTTGGTAAAAGAGTCGATCATTATCCCATATCTCCAAGCTCACTTCATGATAGCAGCTTTGTGGCCAATTTCAACAAAGAAAGCATGGGATATGAATCAGGGACTGGAAGTGTAGGTTGCAACAGCTTTTTCTGTTGGAATAACGACAAACCTCCTAAAAGGGGAAAGATTAAACAACGGCCTCCCCTTCCATCACCCAAAGTTGGACGAGGACGATTCCCATGCTTTGGTGAGTGTGGGAAATCAAGGAAGACAGACAGCAGATTCAAAACATAA 3834 0.4645 MSEMVVMDPSNFHLQKKQLTQIRKAARVLRDPGTTSSWRSPLSTARSLSLSAATPPPPQPPPPPPRPPEESRRVFLYNWRSASQKAKSSVNGENEDDEDGVDGSSVDDSLSDWRNGVDSKSDTYIGGRRHRRHHASMIFRCRDANLVAMGRPSGIKKKKGSKNVHSIALLRHQQQQQQLNTARSGNSKRLLEGILGRDDSVEQSDDTEEYYNSEDFRRICEASPLLSRLRQRNWSRSSSRLLRSKRKDDSSYSYSTPALSTSSYNPYGNRNPSTVESWDGTTASLHDGDDEVDDQLDLPGRQGCGIPCYWSRRSTPRHRGICGSGSCDSPSLSDTIRRKGSSMLCGSQTIYPRRHGLPLGSKKRRSVSMTPQGLLPLLTNSCDGHGGSSMGTGRSDDELSTNFGELDLEALSRLDGRRWSSSCRSQEAMELVALNGEREEEGSPENVRSLSQKYRPMFFDELIGQNIVVQSLVNAISRGRIAPVYLFQGPRGTGKTSTARIFTAALNCLAVGETKPCGICRECSDFISGKSRHFREIDGTNKKGMDRMRYLLKTMPFGTPSPLSPYKVFVIDECHLLPSKTWLAFLKFLEEPPPQVVFIFITPDLENVPRTVLSRCQKYLFNKIKEGDIVARLRKISDDENLDVESDALELIALNADGSLRDAETMLDQLSLLGKRITTSLVNDLVGVVSDEKLLELLELAMSSDTAETVKRARELMDSGVDPIVLMSQLASLIMDIIAGTYHIVDAQQSDSFFGGRSLTEAEMDRLKHALKLLSEAEKQLRVSSERSTWFTATLLQLGSPSPDPTLSGSSRRQSSKTTEDDPSSASRDATIVHKQKPNAHHMPRKSFSPISMPKSAEKNSTHQGDLLSLVDGFNFNAKPVHSQFRNSGASASSHDDVMMGNLVFRSINADKLDDIWERCIERCHSKTLRQLLHAHGKLVSISEAEGGLVAYVAFQDEDIKCRAERFLSSITNSIEIVMRSNVEVKIILLPDGEISMNMKAVGLPDTLGLKQRETTAAVEGERKAFSMKGIDSDLDSSHQELLKVSRGSFNDSEGKLRGGSRDPSNCSPLLDRTFGPTDELAEGHIERSSTKERNQEIPMHRIDSIIREQRLETAWLQVAEKGTPRSMSRLKPEKNQILPQDGTYRQNQVESMNSVGVPSQKWEDELNHEIKVLKINDRRALQKDPVGKRVDHYPISPSSLHDSSFVANFNKESMGYESGTGSVGCNSFFCWNNDKPPKRGKIKQRPPLPSPKVGRGRFPCFGECGKSRKTDSRFKT* 1278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1516 1277 Pfam DNA polymerase III subunits gamma and tau domain III 678 742 IPR022754 GO:0003887
Vvi12g1516 1277 MobiDBLite consensus disorder prediction 33 52 - -
Vvi12g1516 1277 MobiDBLite consensus disorder prediction 1046 1096 - -
Vvi12g1516 1277 Gene3D - 626 687 - -
Vvi12g1516 1277 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 450 894 - -
Vvi12g1516 1277 MobiDBLite consensus disorder prediction 1263 1277 - -
Vvi12g1516 1277 FunFam DNA polymerase III subunit gamma/tau 625 687 - -
Vvi12g1516 1277 MobiDBLite consensus disorder prediction 251 281 - -
Vvi12g1516 1277 Gene3D - 441 622 IPR027417 -
Vvi12g1516 1277 SMART AAA_5 481 643 IPR003593 GO:0016887
Vvi12g1516 1277 NCBIfam DNA polymerase III subunit gamma/tau 448 798 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Vvi12g1516 1277 CDD HLD_clamp_pol_III_gamma_tau 624 687 IPR045085 -
Vvi12g1516 1277 Pfam DNA polymerase III, delta subunit 464 624 - -
Vvi12g1516 1277 MobiDBLite consensus disorder prediction 1236 1277 - -
Vvi12g1516 1277 MobiDBLite consensus disorder prediction 1078 1096 - -
Vvi12g1516 1277 MobiDBLite consensus disorder prediction 237 285 - -
Vvi12g1516 1277 CDD AAA 463 621 - -
Vvi12g1516 1277 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 474 672 IPR027417 -
Vvi12g1516 1277 SUPERFAMILY post-AAA+ oligomerization domain-like 695 796 IPR008921 GO:0003677|GO:0006260
Vvi12g1516 1277 MobiDBLite consensus disorder prediction 26 128 - -
Vvi12g1516 1277 Coils Coil 767 787 - -
Vvi12g1516 1277 Gene3D - 688 803 - -
Vvi12g1516 1277 MobiDBLite consensus disorder prediction 801 863 - -
Vvi12g1516 1277 MobiDBLite consensus disorder prediction 53 70 - -
Vvi12g1516 1277 FunFam DNA polymerase III subunit gamma/tau 445 623 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1516 Vvi-Chr12 22271271 22280811 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1516 452 791 Core DNA Replication Machinery Family AT1G21690 24.789 3.56e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1516 - - vvi:100242129 2405.17