Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1510 ATGTCAGTTGTGTCCCAGTTCACTAAAGTGTTCAATGATTTTCGGCTTTCTAATGCCATTTCAGATTGCCTTGAGTTGCTGGATTTTGCAGCTGATGATCTGAGCTGGTCCCTTTCTGCCATTCAGAATCCTAAAGATAACGGTACCGGCGATCTGGGGTCGGATTTGAAGACATGGTTGAGCTCTACTTTCACTAATCAGGACACATGCATAGAGGGATTTGTTGGTACCAATGGAATTGTCAAGACAGTGGTAGCTGAAAGCCTGAGCCAAGTAGCTTCATTAGTCCACAGCCTTCTTACTATGGTCCATGATCCAGCTCCCAAAGGCAAATCCAATGGCGGTGGTGGCGGTGTGAAGCACGTGGGCAGCGGTGATTTTCCATCATGGGTTGGCAAACACAGCAGGAAGCTCCTTCAGGCCTCATCAGTGTCACCAGATGTTACAGTAGCTGCAGATGGAACTGGGAATTATACTACTGTGATGGATGCAGTCCAAGCAGCCCCTGATTACAGCCAGAACCACTATGTAATCTACATCAAGCAAGGCATTTATAGGGAGAATGTGGAGATCAAGAAGAAGAAATGGAACCTGATGATGGTCGGAGATGGGATGGGCGCTACTGTCATTACTGGAAACCGGAGCTACATCGATGGCTGGACTACATATGCATCTGCAACCTTTGGACCAGAGAAGCACCAAGCGGTAGCATTGAGGTCCGATTCAGACCTTTCGGTCTACTACAGATGCAGCATGAGGGGATACCAGGACACACTGTATCCCCACACGAATCGTCAATTCTACAGAGAGTGTAGAATCAGTGGCACCGTCGATTTCATATTCGGTGATGCCACGGTGGTCTTCCAAAACTGCCAAATCCTGGTGAAGAAGGGCTTACCAAATCAAAAGAACACCATCACCGCCCAAGGCCGCAAAGACCCTGCTCAGCCCACGGGCTTCTCAATACAATTCTCCAACATATCAGCAGATTCTGATCTTCTGGCTTCAGTGAACTCCACACTCTCGTACCTTGGTAGGCCATGGAAGCAATATTCGCGTACCATCATCATGAAATCCTACATCAGTGATGCCATTAGGCCAGAAGGATGGCTAGAGTGGAATGGGGATTTTGCTCTGGATACACTCTACTATGGTGAATATATGAACTATGGACCCAGTGCAGGCCTAGGCAGCAGGGTCCAGTGGCCGGGTTTTCATCTGTTGAACAACTCCGCTCAGGCCGCCAACTTCACGGTGACCGAATTCATAGCCGGAAACCTGTGGCTGCCGTCGACCGGGGTGAAATATTCAGCAGGATTAGCAGTTTAA 1329 0.4868 MSVVSQFTKVFNDFRLSNAISDCLELLDFAADDLSWSLSAIQNPKDNGTGDLGSDLKTWLSSTFTNQDTCIEGFVGTNGIVKTVVAESLSQVASLVHSLLTMVHDPAPKGKSNGGGGGVKHVGSGDFPSWVGKHSRKLLQASSVSPDVTVAADGTGNYTTVMDAVQAAPDYSQNHYVIYIKQGIYRENVEIKKKKWNLMMVGDGMGATVITGNRSYIDGWTTYASATFGPEKHQAVALRSDSDLSVYYRCSMRGYQDTLYPHTNRQFYRECRISGTVDFIFGDATVVFQNCQILVKKGLPNQKNTITAQGRKDPAQPTGFSIQFSNISADSDLLASVNSTLSYLGRPWKQYSRTIIMKSYISDAIRPEGWLEWNGDFALDTLYYGEYMNYGPSAGLGSRVQWPGFHLLNNSAQAANFTVTEFIAGNLWLPSTGVKYSAGLAV* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1510 442 ProSitePatterns Pectinesterase signature 2. 273 282 IPR033131 -
Vvi12g1510 442 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 105 IPR035513 -
Vvi12g1510 442 PANTHER PECTINESTERASE 15 430 - -
Vvi12g1510 442 SUPERFAMILY Pectin lyase-like 143 439 IPR011050 -
Vvi12g1510 442 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 4 104 IPR035513 -
Vvi12g1510 442 Pfam Plant invertase/pectin methylesterase inhibitor 18 93 IPR006501 GO:0004857
Vvi12g1510 442 Pfam Pectinesterase 147 426 IPR000070 GO:0030599|GO:0042545
Vvi12g1510 442 ProSitePatterns Pectinesterase signature 1. 172 191 IPR018040 -
Vvi12g1510 442 FunFam Pectinesterase 4 144 440 - -
Vvi12g1510 442 CDD PMEI-like_4 1 104 - -
Vvi12g1510 442 SMART PMEI_2 1 102 IPR006501 GO:0004857
Vvi12g1510 442 Gene3D - 144 442 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1510 Vvi-Chr12 22226745 22228417 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1510 1 440 Carbohydrate Esterase AT3G43270 63.362 0.0 610
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1510 K01051 - vvi:100233113 867.455