Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1508 ATGGAACTAACAAGTCAAGAAGGGGAGATCCCAATTCCAATAAACAGTGCATATGGAGGTGGTGGGGGACATGGGCATGGGCATGGACATGGGCACATGATCCATCATGATCCTGCTCCCCACAACCACATAATTCATTCTTCAGCACCCCAAATACCTTCCAATGGCCCGCCCATACCCTCAACTCTGGAAGACCATGTGCCCTACAAAAAAGCTGTGAGGTACAGAGAATGCCTGAAGAACCATGCAGCTGCCATGGGAGGGAATGCCACTGATGGGTGTGGTGAGTTCATGCCTGGTGGGGAGGAAGGTACCCTTGAAGCCCTCAACTGCTCAGCCTGCCACTGCCACAGAAACTTCCACAGAAAAGAAGTTGAAGGTGAGAGATCCTCCTGTGACTGCTTCCACTCCCCACACCTCAACAGAGTCGGGAGGAAAGTCATTTTGGGCCACCACAAAAATATCATAGGTCCAGAAGCTTTAGGCTACCCTACCGGAACTCTCATCTCCTCCAGACCACCTCCTCCCCACCAGATGATAATGTCCTACAACATGGGGTCCCTCCCCTCCGAGTCTGATGAACAAGAAGATGGTGGTGGCGGTGTTGTTGCCAGGCCTCCCCAACTTGTCAAGAAAAGGTTCAGAACAAAGTTCAGCCAGGAACAAAAAGAGAAAATGCTCAGCTTTGCAGAGAAAGTTGGTTGGAAAATTCAGAAGCAAGAAGAAGCTGTGGTGCAACAGTTCTGCCAAGAGATTGGTGTCAAAAGACGAGTCCTCAAGGTCTGGATGCACAACAACAAGCACAACCTAGCCAAGAAGACCCCCCTTCCCTCCTCTGATGATTAA 846 0.5035 MELTSQEGEIPIPINSAYGGGGGHGHGHGHGHMIHHDPAPHNHIIHSSAPQIPSNGPPIPSTLEDHVPYKKAVRYRECLKNHAAAMGGNATDGCGEFMPGGEEGTLEALNCSACHCHRNFHRKEVEGERSSCDCFHSPHLNRVGRKVILGHHKNIIGPEALGYPTGTLISSRPPPPHQMIMSYNMGSLPSESDEQEDGGGGVVARPPQLVKKRFRTKFSQEQKEKMLSFAEKVGWKIQKQEEAVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKTPLPSSDD* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1508 281 NCBIfam homeobox domain, ZF-HD class 211 267 IPR006455 -
Vvi12g1508 281 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 75 124 IPR006456 -
Vvi12g1508 281 MobiDBLite consensus disorder prediction 1 31 - -
Vvi12g1508 281 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 74 125 IPR006456 -
Vvi12g1508 281 Pfam ZF-HD protein dimerisation region 73 125 IPR006456 -
Vvi12g1508 281 FunFam Zinc-finger homeodomain protein 2 203 272 - -
Vvi12g1508 281 Gene3D - 204 273 - -
Vvi12g1508 281 SUPERFAMILY Homeodomain-like 210 272 IPR009057 -
Vvi12g1508 281 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 62 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1508 Vvi-Chr12 22175301 22176146 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1508 1 274 ZF-HD Transcription Factor Family AT2G02540 48.220 8.95e-79 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vvi12g1508 ZF-HD_dimer 9.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1508 - - vvi:100247287 567.385