Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1500 ATGGCGCTGGTAGCCTCGAATTATCCGTCAGGAGGACCTCATGCAGGAGCTCCTTGTGATGCTCTATACAAGGAACTGTGGCATGCCTGTGCTGGACCCCTGGTAACTGTTCCCCGTGAAGGGGAGCGAGTTTATTACTTTCCACAAGGTCACATGGAACAGCTTGAAGCATCAACGACACATCAAGGGTTAGACCAGCAAATGCCCTCATTCAATCTGCCATCTAAAATTCTTTGCAAAGTAGTTCATGTTCAACTTCGGGCAGAACCAGAAACTGATGAAGTTTATGCCCAAGTAACTCTGCTACCTGAACCAGATCAAAGTGAGATTACTAGTCCTGATCCTCCACTCCCAGAACCTCAAAGATGCACAGTCCATTCATTTTGCAAGACGCTTACAGCTTCCGACACGAGCACCCATGGTGGATTCTCTGTTCTTCGAAGACATGCAGATGATTGTCTACCTCCATTGGATATGTCCCAGCAGCCACCCTGGCAGGAATTGGTTGCAGCAGATCTGCATGGCAATGAATGGCACTTTCGTCACATATTTCGAGGGCAACCTAGGCGTCACTTGTTGACTACTGGATGGAGTGTATTTGTTAGCTCCAAAAAGTTAGTGGCTGGCGATGCATTTATATTCCTAAGGGGTGAAAACGGAGAACTGCGTGTTGGAGTAAGGAGGCTCATGAGACAACTAAGTAATATGCCATCTTCTGTTATATCCAGCCACAGCATGCATCTTGGAGTTCTCGCCACAGCCTCCCATGCAATTTCAACCGGAACCCTCTTTTCTGTCTTCTATAAACCAAGAACAAGTCGGTCGGAGTTCATTGTAAGCCTCAACAAGTACCTTGAAGCTCGCAACCACAAACTCTCTGTTGGGATGAGGTTTAAGATGAGATTTGAGGGCGAGGAAGTTCCTGAAAGAAGGTTCAGTGGCACAATTGTTGGTGTTGGGGACAAGAATACATCATCAGGATGGGCTGATTCTGAGTGGAGATCCTTGAAGGTTCAATGGGATGAACCTGCATCAATCTTTCGTCCGGAAAGAGTGTCAGCTTGGGAATTGGAACCACTTGTGGCAGCAGCTGCCCCTACAAATTTACAGCCCGCACAGAGGAATAAGCGGGCAAGGCCTCCAGTTTTACCTTCAGCAACACCAGATCTCTCTGTACTTGGCATGTGGAAATCCTCAGTTGAATCTCCATCAGGTTTCCCATATTGTGACCCACATCGTGGCCGAGACCTGTATCCATCACCTAAGTTCTCTTCTATTACAAAGACCAACTCTTTCAGTTTCAGTGGGAATAGCTCCCCCGCTGCAGTTTCCAGCAATTCAATGTACTGGTCGAATAGAATGGAAACCGCAACAGAGTCGTTTGCACCAGCTGTTAACAAAGAATCTGGTGAAAAGAGACGGGACACTGGCAGTGGCTGCAGGCTCTTCGGCTTTCAGCTGCTTGACAACTCCACGTTGGAGGAGACTTTGCCAGTATTGACAGTGGGAGAGGACCAGCCAGTTCCATCTTTAGATGTTGAATCTGACCAGCATTCTGAACCATCTAACATTAACCGATCTGATATTCCTTCTGTAAGTTGTGAGCCTGACAAATTGTCCCTGAGATCTCCCCAGGAGTCGCAAAGCAGGCAAATTCGGAGCTGCACAAAGGTTCACATGCAAGGGATTGCTGTTGGAAGGGCTGTAGATTTGACCCGGTTTGATCGGTATGAGGACCTGCTGAAGAAACTGGAGGAGATGTTTGATATTCAAGGCGAGCTATGTGGGTTGACAAGCATATGGCAAGTCGTGTACACTGATGATGAAGACGACATGATGATGGTTGGCGATGATCCATGGCTTGAGTTCTGCAGCATGGTGAGGAAGATTTTTATCTACACCGCTGAGGAAGTGAAGAGGCTGTCACCCAAGATAAAACTGCCGGCGATGGAAGAGATCAAACCAGGGAAGCTGGATTCAGATGTGGCCGTGGCTGGCACGGACGACCAGTCATCCGTGGAGGAACAACATGGATGA 2037 0.4796 MALVASNYPSGGPHAGAPCDALYKELWHACAGPLVTVPREGERVYYFPQGHMEQLEASTTHQGLDQQMPSFNLPSKILCKVVHVQLRAEPETDEVYAQVTLLPEPDQSEITSPDPPLPEPQRCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVAADLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQLSNMPSSVISSHSMHLGVLATASHAISTGTLFSVFYKPRTSRSEFIVSLNKYLEARNHKLSVGMRFKMRFEGEEVPERRFSGTIVGVGDKNTSSGWADSEWRSLKVQWDEPASIFRPERVSAWELEPLVAAAAPTNLQPAQRNKRARPPVLPSATPDLSVLGMWKSSVESPSGFPYCDPHRGRDLYPSPKFSSITKTNSFSFSGNSSPAAVSSNSMYWSNRMETATESFAPAVNKESGEKRRDTGSGCRLFGFQLLDNSTLEETLPVLTVGEDQPVPSLDVESDQHSEPSNINRSDIPSVSCEPDKLSLRSPQESQSRQIRSCTKVHMQGIAVGRAVDLTRFDRYEDLLKKLEEMFDIQGELCGLTSIWQVVYTDDEDDMMMVGDDPWLEFCSMVRKIFIYTAEEVKRLSPKIKLPAMEEIKPGKLDSDVAVAGTDDQSSVEEQHG* 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1500 678 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 21 642 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vvi12g1500 678 Pfam B3 DNA binding domain 128 228 IPR003340 GO:0003677
Vvi12g1500 678 MobiDBLite consensus disorder prediction 658 678 - -
Vvi12g1500 678 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Vvi12g1500 678 MobiDBLite consensus disorder prediction 538 553 - -
Vvi12g1500 678 SUPERFAMILY DNA-binding pseudobarrel domain 118 257 IPR015300 -
Vvi12g1500 678 CDD B3_DNA 126 228 IPR003340 GO:0003677
Vvi12g1500 678 Pfam Auxin response factor 254 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vvi12g1500 678 Pfam AUX/IAA family 550 589 IPR033389 -
Vvi12g1500 678 Gene3D - 548 642 - -
Vvi12g1500 678 MobiDBLite consensus disorder prediction 504 553 - -
Vvi12g1500 678 ProSiteProfiles PB1 domain profile. 553 646 IPR000270 GO:0005515
Vvi12g1500 678 FunFam Auxin response factor 548 642 - -
Vvi12g1500 678 Gene3D - 291 365 - -
Vvi12g1500 678 SUPERFAMILY CAD & PB1 domains 555 630 - -
Vvi12g1500 678 SMART B3_2 128 230 IPR003340 GO:0003677
Vvi12g1500 678 MobiDBLite consensus disorder prediction 512 530 - -
Vvi12g1500 678 FunFam Auxin response factor 126 230 - -
Vvi12g1500 678 FunFam Auxin response factor 291 364 - -
Vvi12g1500 678 Gene3D - 125 230 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1500 Vvi-Chr12 21940609 21948769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1500 3 647 B3 DNA Binding Superfamily AT1G59750 72.462 0.0 936
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vvi12g1500 AUX_IAA 1.3e-10 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1500 K14486 - vvi:100264303 1377.84