Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1499 ATGGAGAATCAGGGCATGAGTCGGAAAGAGAAGAGAAAGGCGGCGAAGAAGCAGAAGAGGAAGCAGACGAGAAGGGAGGCAGCGGTGAGGCTGCGGGAGGAAGAGGAGGCGAAGTTGAATGATCCGGAGGAGCAGGAGAGGATGAGGCTGATGGAGCAGGAAGAGGCCGAGAGGTGCGAGAGGGAGAGGAGGAAGTTTGAGGAGAGCGAGAGGATGTGGCTCGAGGCGGCGGCGGAGAGGAAGAGGAGGAAAGAAGTGGAGGAGGAGGAGCGGAGGAAGATTCTGGAGGAGTTGGAGAAGAAGGAGGTTGAAAAGGAGAATGAGTTGAATGAGGATGATGATTGGGAATATGCAGAAGGGCCTGCAGAAATTATCTGGCAAGGAAATGAGATAATTGTCAAGAAGAAAAGGGTCAGGATTGCAAAGAAAGATGTGGACCAACATAGTAGAAAAGAGGAGGATACTGAGAGACCCACATCAAATCCTCTTCCTCCTCAATCAGAAGCATTTTCTGATCACAATGCATCAATAATTTCATCCCAACAGTTGTTTGCAGATGTTTCAGAACAAATCCCAAACTTTGGGACGGAACAGGATAAAGATCATTGTCCTTTCCATATCAAAACTGGAGCTTGTCGGTTTGGGCAACGTTGCAGCAGAGTTCATTTTTACCCTGATAAATCGTGCACACTTCTAATCAAGAACATGTACAATGGACCTGGCCTTGCTTGGGAGCAAGATGAAGGACTTGAGTATACAGACGAAGAGGTTGAACGCTGTTATGAGGAGTTTTATGAGGATGTACAAACAGAGTTCCTGAAGTTTGGAGAAATTGTGAACTTCAAGGTGTGCAGAAATGGTTCATTCCATTTGCGGGGCAATGTGTATGTACACTACAAGTCTTTGGATTCTGCTGTGCTGGCTTATCATTCAATAAATGGTCTCTATTATGCTGGCAAGCAGGTAACATGTGAGTTTGTTGGTGTGACCAGATGGAAAGTTGCCATATGTGGGGAGTACATGAAGTCCAGGTTCAAGACGTGCTCTCATGGTACGGCATGCAACTTCATACACTGTTTCCGCAATCCGGGTGGAGACTATGAATGGGCCGATTGGGATAAACCGCCCCCAAGATATTGGGTGAAAAATATGGTTGCTTTATTTGGGCTTACAGATGAATCTGGGTATGACAAAGAGGTGAAGCAAGAAAGCATGGGCCGGAGGAGGAGCACCAGCAATGCAGGAACAGTAGATGCAGATAGGTATCACTCTAGACGTTCTAGATCCAGGGAGAGTGGTTACTCGCATGGTGAATATGCTAGAAGGCAATTTGATGAAAATGATGCTCATAAGAACGTGTACTATCAAAGGCACACAAGTGATGGTAGAAAACGAATCAAAATGCATGAGGAACGATATGAAGAGGAAGCGCATTTTGGAGACAATCGGTATAGCAGGAGTAGAATTCACAATGTTGAATCTGATGGAGATTTGTTGAGGGATGGGACCAGAGACAGAGAAAGACACAATGATCACAGAAGGAAAAGCTCAAGACAACGGGAAAAGGTATTGGAATCCCCGGACGATTATGGGGAGAGAAAGAACAAAACTTATGACTCAGAAGGAGATTGGTCTGATAGGGAGGGAGACAAGTCCAGAAAACATGGTCACACAAGAAAAAGCTTGAAGCACCAGAAGGAAGCAATGGCGGTCATGGATGATCTTGGAGACAGCAACAACAGTATTCATGAGCCTGATTCTGATGGAGGTTGGTCGGACAGGGATGGAGACCATGACGGGCATCATGATCACACAATGAAACGCTTGAAAAATAGGAGCAAAATGTCTGAATTCTCAAATGATCATAGGAACAGCAAGTACAGAACTGATGCCACTGATTCTGATGGTGATTCCTCACATAGGAACAGGCAAGGAGACAGATACCATAGTCACAGGCGAAAGAGCTCAAGGCACTGGGATGAAGTCTCAGAAACTGCAGATGATGACGAGGACAAAAGGAAGAGAACTCATGATACTGATCCCACTGGAGATTGGTCAGATGAGGTTGGAGAAAGACACCAAAGTAAAAGAAGGAATTGCTCAAGACACTGGTCAGATGACCATGAGGAAACAGAAAAAAATGTAAAAGATGAATTTCAGGGTCAGGAGTTTGACACTGAAAAACCAGACGTACCAAGAGTCCAAAAACATAGTCACTCTAGCAGAAAGGATGGTTCAAACAAAGAGATGATTAGCAGAGCAGATTTTATAAGTGAGGATAAAAAATCAAATGGGAATCATGAGGCCAGCAGTTCAGATCAACATGGCAGGAGAAGTAAATCATACAATCCTGATTCGAGATACCACTCTGATGAAAATATTGACAAAGAGGGTGACTGGGAACCTGAAAAAACCCGAAAATCTAGAAGAGAGAAAAGTACTTCTCATAAACATCACAAGTACAGAGACCATGAAGACTACAGCAAGAGCAAATCAAGAGGTGGTGATCGGTCAATCCATAGGAGACACTCAACCAGCTTAAACAATGCAGATTCTTCTGAAGAGTATCAAGACTCTGAAAATAAAGACAAGAGGCATGGTGGAAAACATCAATCTAGTAGTCACAGGCGGCACAGTGAGAAATCTAATTCCTAA 2655 0.4444 MENQGMSRKEKRKAAKKQKRKQTRREAAVRLREEEEAKLNDPEEQERMRLMEQEEAERCERERRKFEESERMWLEAAAERKRRKEVEEEERRKILEELEKKEVEKENELNEDDDWEYAEGPAEIIWQGNEIIVKKKRVRIAKKDVDQHSRKEEDTERPTSNPLPPQSEAFSDHNASIISSQQLFADVSEQIPNFGTEQDKDHCPFHIKTGACRFGQRCSRVHFYPDKSCTLLIKNMYNGPGLAWEQDEGLEYTDEEVERCYEEFYEDVQTEFLKFGEIVNFKVCRNGSFHLRGNVYVHYKSLDSAVLAYHSINGLYYAGKQVTCEFVGVTRWKVAICGEYMKSRFKTCSHGTACNFIHCFRNPGGDYEWADWDKPPPRYWVKNMVALFGLTDESGYDKEVKQESMGRRRSTSNAGTVDADRYHSRRSRSRESGYSHGEYARRQFDENDAHKNVYYQRHTSDGRKRIKMHEERYEEEAHFGDNRYSRSRIHNVESDGDLLRDGTRDRERHNDHRRKSSRQREKVLESPDDYGERKNKTYDSEGDWSDREGDKSRKHGHTRKSLKHQKEAMAVMDDLGDSNNSIHEPDSDGGWSDRDGDHDGHHDHTMKRLKNRSKMSEFSNDHRNSKYRTDATDSDGDSSHRNRQGDRYHSHRRKSSRHWDEVSETADDDEDKRKRTHDTDPTGDWSDEVGERHQSKRRNCSRHWSDDHEETEKNVKDEFQGQEFDTEKPDVPRVQKHSHSSRKDGSNKEMISRADFISEDKKSNGNHEASSSDQHGRRSKSYNPDSRYHSDENIDKEGDWEPEKTRKSRREKSTSHKHHKYRDHEDYSKSKSRGGDRSIHRRHSTSLNNADSSEEYQDSENKDKRHGGKHQSSSHRRHSEKSNS* 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1499 884 MobiDBLite consensus disorder prediction 143 170 - -
Vvi12g1499 884 MobiDBLite consensus disorder prediction 399 445 - -
Vvi12g1499 884 FunFam Zinc finger CCCH domain-containing protein 5 230 327 - -
Vvi12g1499 884 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 182 539 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vvi12g1499 884 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 332 359 IPR000571 GO:0046872
Vvi12g1499 884 MobiDBLite consensus disorder prediction 655 809 - -
Vvi12g1499 884 SMART rrm2_1 253 325 IPR003954 GO:0003676
Vvi12g1499 884 Gene3D - 228 327 IPR012677 -
Vvi12g1499 884 MobiDBLite consensus disorder prediction 26 91 - -
Vvi12g1499 884 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 229 329 IPR000504 GO:0003723
Vvi12g1499 884 Coils Coil 77 111 - -
Vvi12g1499 884 MobiDBLite consensus disorder prediction 10 25 - -
Vvi12g1499 884 ProSiteProfiles Zinc finger C3H1-type profile. 331 361 IPR000571 GO:0046872
Vvi12g1499 884 MobiDBLite consensus disorder prediction 419 445 - -
Vvi12g1499 884 MobiDBLite consensus disorder prediction 1 91 - -
Vvi12g1499 884 MobiDBLite consensus disorder prediction 487 884 - -
Vvi12g1499 884 Coils Coil 49 69 - -
Vvi12g1499 884 MobiDBLite consensus disorder prediction 487 555 - -
Vvi12g1499 884 MobiDBLite consensus disorder prediction 143 158 - -
Vvi12g1499 884 SUPERFAMILY RNA-binding domain, RBD 261 328 IPR035979 GO:0003676
Vvi12g1499 884 ProSiteProfiles Zinc finger C3H1-type profile. 197 225 IPR000571 GO:0046872
Vvi12g1499 884 SMART c3hfinal6 331 360 IPR000571 GO:0046872
Vvi12g1499 884 SMART c3hfinal6 198 224 IPR000571 GO:0046872
Vvi12g1499 884 PRINTS U2 auxiliary factor small subunit signature 286 308 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vvi12g1499 884 PRINTS U2 auxiliary factor small subunit signature 222 242 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vvi12g1499 884 PRINTS U2 auxiliary factor small subunit signature 203 222 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vvi12g1499 884 PRINTS U2 auxiliary factor small subunit signature 313 337 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vvi12g1499 884 PRINTS U2 auxiliary factor small subunit signature 351 363 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vvi12g1499 884 PRINTS U2 auxiliary factor small subunit signature 258 273 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vvi12g1499 884 Coils Coil 6 26 - -
Vvi12g1499 884 MobiDBLite consensus disorder prediction 587 644 - -
Vvi12g1499 884 MobiDBLite consensus disorder prediction 818 848 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1499 Vvi-Chr12 21925971 21936166 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vvi12g1499 zf-CCCH 2.5e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1499 K24273 - vvi:100247160 1640.17