Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1491 ATGGATCAGAGAGATGGAGAGAATGACATTGAGATCGAAGGAGTGTGGGGTGATTGGAGGGAGATGGAGGGGAACGGATCGGACTTCTCTGACAAGGATACGGCGATGAGGGAGCCGTTGCTCGTTAGGAAGAGGTTGAATAGTACTTCGCAGATTGCAATTGTGGGAGCCAGCGTTTGTCCGATTGAGAGCTTGGACTACGAGATTGTGGAAAATGAACTTTTTAAGCAGGACTGGAGATCTAGAAAAAGGGTTCAGATATTTCAATATATTGTGCTCAAGTGGACGCTTGCCCTCCTTATCGGGTTAGGTACTGGGCTGGTTGGCTTCTTCAACAACCTTGCAGTTGAAAATATAGCCGGTTTCAAACTTTTACTCGCTAGCAATCTCATGCTTAAGGACAAGTATGGTCTGGCATTTGTAACATTTGCGGGTTGTAACATGGTTTTGGCAATTGCTGCGGCTGTCCTCTGTGCTTACATTGCCCCTTCAGCTGCGGGCTCTGGCATCCCTGAGGTGAAAGCATATCTCAATGGCATAGATGCTCATTCTATATTGGCTCCAAGTACCCTCTTTGTAAAGATTTTTGGTTCCATTCTTGGAGTGTCTGCTGGATTTGTTGTGGGTAAGGAAGGGCCCATGGTCCATACTGGCGCTTGCATAGCCTCTTTGCTTGGGCAGGGAGGATCCCGCAAATACCATTTGACATGGAAATGGCTCAGATACTTCAAAAATGACAGGGATCGTCGTGATTTGATTACCTGTGGTGCTGCAGCTGGTGTGGCTGCTGCTTTCCGTGCTCCAGTGGGTGGGGTCCTCTTTGCACTTGAAGAAGTAACTTCATGGTGGAGAAGTGCTCTTCTCTGGAGAACCTTTTTTACAACAGCTGTAGTAGCAGTGGTGTTGAGAGCCCTCATAGAATTTTGTCGGAGTGGCAAGTGTGGGTTATTTGGGCAAGGAGGTCTGATCATGTTTGATGTCAATTCGTCTCAAGCCACTTATGATACCCCTGATTTACTGACAGTCATATTCCTTGGAATTGTTGGTGGCATTTTTGGAAGCCTCTACAATTTTCTCGTGGATAAGGTCCTTCGTACGTATAGCATCTTCAATGAGCAAGGTCCTAAATTTCGGGTCCTGCTTGTCATTGTCATCTCCCTCCTGACATCTTGCTGCGCTTATGGTATTCCATGGCTGGCACAGTGCAAGCCTTGTCCAATTGAGCTGAAGAATGAGTGCCCCACCGTAGGCCGCTCTGGAAACTACAAGAACTTCCAATGTCAACCAGGCCATTACAATGACCTTGCCTCCCTCTTTCTCAACACCAATGATGATGCCATACGCAACCTATTCAGCAATGGCACCCAAAATGAATTCCAACTCTCCACCCTTGTCATTTTCTTTGCTGCTGTATACTGCCTTGGCATTATTACTTATGGCATTGCTGTTCCCTCGGGGCTATTTATCCCTGTCATACTTGCTGGAGCCTCCTATGGTCGCATTGTTGGGACAGTTGCTGGCTCTCTGACTAGTCTTGATGTGGGTCTCTTTTCACTCCTTGGAGCTGCCTCCTTCCTGGGTGGCACCATGAGAATGACAGTCTCCCTCTGTATCATTCTCCTGGAACTTACCAATGATCTGCTAATGCTCCCATTGATGATGCTGGTTCTCCTTATTTCAAAAACGGTTGCAGATTGTTTCAACAAGGGTGTCTATGACCAAATAGTGAGAATGAAGGGGTTTCCTTATATGGAAGCCCATGCAGAGCCATACATGAGGCACCTGGTCGCAAAGGATGTTGTTTCTGGTCCATTAATCACCTTTTCGAGCATTGAAAAGGTGGGAAATATACTACATGCTTTGAAGACAACAGGCCATCATGGGTTCCCTGTCATTGATGAACCGCCTTTCACAGATGCACCAGAGCTGTGTGGGCTTGTTTTGAAGTCTCATTTGCTGGTTTTACTCAAAGGGAAGAAGTTTTCAAAGACGAGGATGTTGGTCGGATCAGAAATCTTGAAAACATTTGAGGCGAATGATTTTGCTAAGGCAGGATCAGGCAAAGGAGTCAAACTGGAGGACCTGGACATCACAGCCGAGGAGATGGAGATGTATGTTGATCTACATCCTATCACCAATACATCCCCATACACAGTTGTGGAAACGATGTCTCTAGCAAAAGCTGCTGTCCTCTTTCGGGAACTAGGCCTTCGACATTTGTGTGTGGTGCCAAAGACTCATGCTGTAAGACTCCTTTTCTCCCTCTCACACACACCCAGAAATACACACACAGACAATAGAGTGAAGACTAAATCCATTTCATGTCACCCTGGTCAAGTTTAG 2343 0.4648 MDQRDGENDIEIEGVWGDWREMEGNGSDFSDKDTAMREPLLVRKRLNSTSQIAIVGASVCPIESLDYEIVENELFKQDWRSRKRVQIFQYIVLKWTLALLIGLGTGLVGFFNNLAVENIAGFKLLLASNLMLKDKYGLAFVTFAGCNMVLAIAAAVLCAYIAPSAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSILGVSAGFVVGKEGPMVHTGACIASLLGQGGSRKYHLTWKWLRYFKNDRDRRDLITCGAAAGVAAAFRAPVGGVLFALEEVTSWWRSALLWRTFFTTAVVAVVLRALIEFCRSGKCGLFGQGGLIMFDVNSSQATYDTPDLLTVIFLGIVGGIFGSLYNFLVDKVLRTYSIFNEQGPKFRVLLVIVISLLTSCCAYGIPWLAQCKPCPIELKNECPTVGRSGNYKNFQCQPGHYNDLASLFLNTNDDAIRNLFSNGTQNEFQLSTLVIFFAAVYCLGIITYGIAVPSGLFIPVILAGASYGRIVGTVAGSLTSLDVGLFSLLGAASFLGGTMRMTVSLCIILLELTNDLLMLPLMMLVLLISKTVADCFNKGVYDQIVRMKGFPYMEAHAEPYMRHLVAKDVVSGPLITFSSIEKVGNILHALKTTGHHGFPVIDEPPFTDAPELCGLVLKSHLLVLLKGKKFSKTRMLVGSEILKTFEANDFAKAGSGKGVKLEDLDITAEEMEMYVDLHPITNTSPYTVVETMSLAKAAVLFRELGLRHLCVVPKTHAVRLLFSLSHTPRNTHTDNRVKTKSISCHPGQV* 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1491 780 CDD CBS_pair_voltage-gated_CLC_euk_bac 597 749 - -
Vvi12g1491 780 SUPERFAMILY Clc chloride channel 72 586 IPR014743 -
Vvi12g1491 780 Gene3D Clc chloride channel 86 584 - -
Vvi12g1491 780 Gene3D - 585 756 IPR046342 -
Vvi12g1491 780 FunFam Chloride channel ClC3 86 403 - -
Vvi12g1491 780 CDD ClC_6_like 63 584 - -
Vvi12g1491 780 PRINTS Plant CLC chloride channel signature 311 318 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vvi12g1491 780 PRINTS Plant CLC chloride channel signature 293 303 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vvi12g1491 780 PRINTS Plant CLC chloride channel signature 279 287 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vvi12g1491 780 PRINTS Plant CLC chloride channel signature 435 451 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vvi12g1491 780 PRINTS Plant CLC chloride channel signature 68 76 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vvi12g1491 780 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 30 750 - -
Vvi12g1491 780 Pfam Voltage gated chloride channel 151 565 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi12g1491 780 PRINTS Chloride channel signature 194 213 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi12g1491 780 PRINTS Chloride channel signature 533 552 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi12g1491 780 PRINTS Chloride channel signature 483 503 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi12g1491 780 PRINTS Chloride channel signature 571 585 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi12g1491 780 PRINTS Chloride channel signature 258 277 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi12g1491 780 PRINTS Chloride channel signature 515 531 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi12g1491 780 PRINTS Chloride channel signature 163 180 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi12g1491 780 SUPERFAMILY CBS-domain pair 588 745 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1491 Vvi-Chr12 21812606 21819002 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1491 2 746 Ion Channels AT5G49890 76.101 0.0 1142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1491 K05016 - vvi:100245380 1366.29