Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1483 ATGCAAAGGGGAACTATATGGGGTAGAACACCTACTACAAAAGTGTACAGTTTGGCTATTGATTTTGCTTTTTGCCAAATTTTACAAGATATAGAAATTCCCAAATTTCAGAGGATTTTGATCTGTGGCAGAGATGATGCAGGCCTCCTCACGTCAAGATTGAAGAATCTACAGCAAGAAAAGGGAATGTTTGATCTTGTCATTCACGTTAAGGCCTCTTCTTGTAAAAGTGCTAGAGATATTGAAGATGACATTGCAAGAGAACTGGGTCTCTCAACATCCAGCAGACAGGAAGTGGATGGATTGCTGAAAAGCAAAAGCTTTTTGATCCTTCTTGACGATGTTGATCTTGCTTCATCGACAAATCTCAACGACGTGGGGACCAATTGGTGGAACTCGAAAAAGTTTCAAAAGATGGTTTGTACAACTGGCTCTATGGGAAGGAGAGCTGATCACACAGAAGCCGATCTGGAGATTAGGTTGGAGGATCATCTGTTCACATGGGAGTTATTTTGTATGGAAGTTGGCGATGTTGTTCATTTTTCAGGCATCCAACACTTTGCAATACGCATGGTCAAAGAGTGCAAGGGTCATTTACTTGTCATTGTTTTAATGGCAAGAGCCTTGAGAGATATTGATGAGGTTCACACATGGGAATGTGCATCTCTTGCATTGACCTTACAACCCACTCAGTTGAGAGACGATGATGTCTTATTTAATGCCTTAGCATTCGTCTGTGGACGTTTAGGGTCTGCAATGAACTGTTTGAAGTGCTTAGTAGAAATGGGATGCTGGGGAGAGTTAGAGGAAGGAGATTTGATTGGCAGGTGGATCACAGACGGCTTAATTAGAAAAGTGGATGAAGGAAAAGAGATGGTTCGGCATCTTGTTGACGCCTTCTTGTTCAAGAGGTCTTGGAAGGGAGATTCTTCTTTTGTCAAAATGCACAGTAAAATCCATGAGGTCTTGCTAAATATGTTAGGACTTAAAAGAGAGTCGCTATTTCTTTGGCTAGGGGGAAAGGGATTAACTGAGCCACCAAGAGATGAGGCATGGGAAAAAGCCAATGAGGTGCATTTGATGAACAATAAACTGTCTGAGCTACCGAAGAGTCCACATTGCCCTGAACTCAGGGCACTGTTCTTACAAGCCAATCATGGTCTGAGAGTTATTCCTCCAAAATTCTTTGAAGGCATGCCTGCCCTACAATTCTTAGACTTGTCCAACACCGCAATTAGATCTTTACCATCTCTTTTTGAATTGGTCCAACTCAGAATCTTCATTCTAAGAGGATGTCAACTTCTCATGGAGTTACCACCCGAAGTTGGTAATCTCAGAAATCTTGAGGTGCTTGATCTTGAAGGGACTGAAATTATAAGCCTACCTATGACTATCAAATGGCTGACCAACCTCAAGTGTCTGAGAGTGTCCTTTTATGGGTACAGTAACCAAACTGGACAATCGTCGGATACAATGATTCCCCACAACATGTTATCAGGACTCACTCAATTGGAAGAGTTAGGCATACATGTGAATCCAGATGATGAGCGATGGGATGTGACCATGAAAGATATTGTTAAGGAAGTCTGCAGCTTCAAACACTTGGAGACTCTTAAACTTTACTTGCCAGAGGTTATACTTGTGAATGAGTTCATGGGGAGTGGAACATCATCAAGAAACCTATCATTGATGAACTTCAGGTTTATTATTGGCAGCCATCGCAAGCGCTTTGTATCCCGACTACCACAAGAAATTGTGGTCAAATTTGAACAGCAAAAAAGATGCTTGAAGTATGTCAATGGTGAAGGTATCCCAATGGAAATTAAGAAGATACTCGAACATGCTACCGCTCTGCTTTTGGAACGCCATTTAACTCTTACTAAACTGTCTGAATTTGGGATTGAAAATACAATGAAGCTAGAATTTTGTGTATTGGGGGAATGTAGCAAGATTCAAACCCTTGTGGATGGAGCAGAAAATTATAGACAAGGAGATGATTATGGATATGTTCATCAAAAAATCATACTTGGATCACTTCGATACTTGAGGCTTCACTATATGAAGAATTTAGGCAGTATATGGAAGGGGCCAATCTGGGAGGGTTGCCTATCCAGACTCGAGTCTCTAGAATTGTATGCATGCCCCCAATTGAAGACCACTTTTACTTTGGCTTTGCTTGAAAATCTCAACCGTTTAAAGGAGCTTGCGGTTGAAAACTGCCCCAAAATAAACAGCTTGGTGACTCATGAAGTCCCTGCAGAAGATATGCTGCTCAAAACATACCTTCCAAAGTTGAAGAAGATATCACTTCATTACTTGCCTAAATTAGCCAGCATTTCCAGTGGTTTACACATTGCACCACACTTGGAATGGATGAGCTTCTATAATTGCCCAAGCATTGAGGCTCTTTCTATCATGGAAGTTTCTAGTAATAATTTGAAGGTGATTATTGGAGAGGTTGACTGGTGGAGGGCATTGAAGTGGCGTAAACCAGTTCTAAGACGTAAGCTGGATTCTATATTTGTCCCCATTAAATCAGATGCTGATTTGATGACTCAGTTAGCGGAAATTGGGAATCAACTTCTAGCTCCCAAGCAAGAGACAAATCTGTCTCAACAGTCAGGTTCTGATGACTCCTTGAAGCCCCCTGTAGTAGATGCCTTGAAGGCCCTTGCAGTGGAGGCCTTGAAGGCCCTTGCAATGGAGGCAGGAACCACCTCAGTGGATAAGCAGCGTCATGAGCCTTCTCCATTGCCACTGTTGTCTCCTTCAACAAAGAACTCCTTGAAGGCCATTGTAGTAGAAGCAGGAACCACCTCAGAGCAGACGCAGCTTTCTGAGCCTACGCCACAGCCCCTTTTGTCCTTGTCCACAGAGCAAGACACTGTAGAGATGGCTGATGCAGCAGAAGTTGACTTACGTAGAGTCGGAAGAAGCTTATTTCCTTCTGCCAGTTCCATAATTGGATTTCCCAAAGACCTGAAAAGAAACTATAAAATGTTGACAGAAGGAGCAGAAAAGCTCAAGGCACTGAAGTATGATATATTGGAAAGAAGCGGACATAAGAAAAGCCCGGCCTTGAGAGAATGGATGGATAGGGCTGAGATGATCAGCGAAGAAGTGAACCAACTAGAAACTAAATACAATGATGAAATGGAGCATCCATGGAGGCTGGTTCGTTTTTGGGAACACTCATATCTTAGCAAAGTCATGGCGAAGAAGCATAATCAAGTTCAAAGTCTTTTGGAAGGACATGATAAAAGAAGAGTATGGATGAGCAAAGTTGTAGAAGATGTAGTGAGTTTTCTAGAGGATGAGCAAATAAGAAGAATAGGAATCTGGGGAACAGTGGGAACTGGGAAAACCACAATAATGCAGAACTTGAACAATCATCAAGATATTGCTAAAATGTTTGATATTGTCATCTGGGTAACCGTCTCAAAGGAGTCGAGCACAAAAAAGTTGCAAGATGCAATCTTGCAGAGGCTAAAAATGAATATGGAGGGCACTGTTAGCATTAAGGAAAATTCTCACAGAATTTCTGAAGAGCTAAAGGGAAGGAAGTGTCTGATTCTTCTGGATGAAGTTTATGACTTTATTGATCTACATGTGGTCATGGGAATCAACGACAATCAGGAGAGCAAGGTGGTGTTGGCGAGTACGATTGGTGACATTTGCAATGACATGGAAGCTGATGAGCTAATCAATGTGAAACCATTGTCAGATCATGAAGCTTTCAACATGTTCAAGGAAAAGTTGGGTCGGTCTATTTACTCCCCACAAATTGAACGAGTAGCTGAACAGGTGGTTAGAGAGTGTGGTGGTTTACCCTTGCTGATAAACATTGTGGCCATGATCTTCAGAACTAAAGGGGAAGATATTTCCCTTTGGATAGATGGATTGAAACATCTACAAAGATGGGAGGATATTGAAGGCATGGATCATGTGATTGAATTCCTGAAGTTTTGTTATGATTATTTAGGTAGTGACACAAAGAAGGCTTGTTATCTGTATTGTGCGCTATTTCCTGGAGAATATGATATTAATGTAGATTATCTACTAGAGTGTTGGAAAGCTGAAGGCTTTATTCCTGGTACAGTGGCTTTTAGAGATGCACGTCACCAAGGACATGTCATATTGGATGATCTTATCAACCTATCATTGCTAGAGAGAAGTGGCAAGGGGAAATGTGTTAAGATGAACAGAATTCTTCGAAAAATGGCTCTTAAAATCTCTTTGCAAAGCGATGGCTCGAAGTTTTTGGCAAAACCGTGTGAGGGATTACAAGATTTCCCAGACAGTAAAGAGTGGGAAGATGCAAGTCGAATCTCTTTGATGAATAACCAGCTCTGCACTTTACCAAAATCTCTAAGATGCCACAATCTCTCAACATTATTGCTCCAGAGGAATAATGGCTTGAGTGCTATTCCTTTCCCCTTCTTTAATTCTATGCATTTACTTCGAGTTCTGGATCTGCATGGGACTGGTATCATGTTATTACCTTCATCTATATCCAAGTTGATTCATCTTAGAGGGCTCTATTTAAATTCTTGCCCCCACTTGATAGGACTCTTGCCTGAAATAAGAGCACTTACGAAGCTTGAGTTGCTTGATATTCGACGAACGAAAATTCCGTTTCGTCACATTGGAAGTTTAATATGGTTGAAGTGTTTGCGAATATCATTGTCTAGTTTTTCCATGGGAATCAAATTGGGGAGCATCTCAGCTTTTGTTTCATTGGAAGAATTTTGTGTTGATGATGATGTGTCTGTTGAAAAGCATTATAAGTATTTAAAGGATGTTACCAAGGAGGTGATTACCTTGAAAAAATTAACTTCCGTTCAATTTTGCTTCCCTACGGTTGACTCCCTTGACTTGTTCGTCCATAGAAGCCGAGAATGGAAGAAGATCTCACACTTCTCGTTTCAATTTTCTGTTGGTCACCAGGACTCGACCTCCTCTCACTTTCTGAAGTCTTCTGATTATCGAAGCCTCAATTGCTTGAAATTAGTCAATGGTGGAGGCAGGCATCCTGTAATCACAAAGGTACTTATGGTGACAGATGCATTCGGATTAATTAACCACAAGGGAGTTTCAACACTATCAGATTTTGGCATTCACAACATGAAAAACATGTTAGTTTGTTCAGTTGAAGGGTGCAATGAAATTAGAACCATCATATGTGGTAATGGAGTGGCAAATAGCGTGCTAGAAAACTTGGATATTTTATATATCAAGAACGTCCCAAAATTGAGAAGCATTTGGCAGGGGCCTGTTCCTGAGGGAAGTCTAGCTCAGCTAACCACTCTAACATTAACTAAATGCCCAGAGTTGAAGAAGATATTTTCCAACGGCATGATTCAACAGCTTTCTAAACTACAGCACTTGAAAGTGGAAGAATGTCATCAAATTGAAGAAATAATAATGGACTCTGAGAACCAGGTATTAGAAGTTGATGCACTTCCAAGATTGAAGACTCTAGTACTCATTGATCTTCCAGAACTGAGAAGCATTTGGGTTGATGATTCATTGGAGTGGCCTTCCTTACAAAGGATTCAGATATCTATGTGTTACATGTTGACGAGATTGCCTTTCAACAATGCCAATGCAATCAGATTGAGACACATCCAAGGACAACAGTCGTGGTGGGAAGCGCTAGTATGGGAAGGTGATCCCATAAAACAAAGATTACAGTCTCTATGCATCCTCAACTAG 5715 0.4107 MQRGTIWGRTPTTKVYSLAIDFAFCQILQDIEIPKFQRILICGRDDAGLLTSRLKNLQQEKGMFDLVIHVKASSCKSARDIEDDIARELGLSTSSRQEVDGLLKSKSFLILLDDVDLASSTNLNDVGTNWWNSKKFQKMVCTTGSMGRRADHTEADLEIRLEDHLFTWELFCMEVGDVVHFSGIQHFAIRMVKECKGHLLVIVLMARALRDIDEVHTWECASLALTLQPTQLRDDDVLFNALAFVCGRLGSAMNCLKCLVEMGCWGELEEGDLIGRWITDGLIRKVDEGKEMVRHLVDAFLFKRSWKGDSSFVKMHSKIHEVLLNMLGLKRESLFLWLGGKGLTEPPRDEAWEKANEVHLMNNKLSELPKSPHCPELRALFLQANHGLRVIPPKFFEGMPALQFLDLSNTAIRSLPSLFELVQLRIFILRGCQLLMELPPEVGNLRNLEVLDLEGTEIISLPMTIKWLTNLKCLRVSFYGYSNQTGQSSDTMIPHNMLSGLTQLEELGIHVNPDDERWDVTMKDIVKEVCSFKHLETLKLYLPEVILVNEFMGSGTSSRNLSLMNFRFIIGSHRKRFVSRLPQEIVVKFEQQKRCLKYVNGEGIPMEIKKILEHATALLLERHLTLTKLSEFGIENTMKLEFCVLGECSKIQTLVDGAENYRQGDDYGYVHQKIILGSLRYLRLHYMKNLGSIWKGPIWEGCLSRLESLELYACPQLKTTFTLALLENLNRLKELAVENCPKINSLVTHEVPAEDMLLKTYLPKLKKISLHYLPKLASISSGLHIAPHLEWMSFYNCPSIEALSIMEVSSNNLKVIIGEVDWWRALKWRKPVLRRKLDSIFVPIKSDADLMTQLAEIGNQLLAPKQETNLSQQSGSDDSLKPPVVDALKALAVEALKALAMEAGTTSVDKQRHEPSPLPLLSPSTKNSLKAIVVEAGTTSEQTQLSEPTPQPLLSLSTEQDTVEMADAAEVDLRRVGRSLFPSASSIIGFPKDLKRNYKMLTEGAEKLKALKYDILERSGHKKSPALREWMDRAEMISEEVNQLETKYNDEMEHPWRLVRFWEHSYLSKVMAKKHNQVQSLLEGHDKRRVWMSKVVEDVVSFLEDEQIRRIGIWGTVGTGKTTIMQNLNNHQDIAKMFDIVIWVTVSKESSTKKLQDAILQRLKMNMEGTVSIKENSHRISEELKGRKCLILLDEVYDFIDLHVVMGINDNQESKVVLASTIGDICNDMEADELINVKPLSDHEAFNMFKEKLGRSIYSPQIERVAEQVVRECGGLPLLINIVAMIFRTKGEDISLWIDGLKHLQRWEDIEGMDHVIEFLKFCYDYLGSDTKKACYLYCALFPGEYDINVDYLLECWKAEGFIPGTVAFRDARHQGHVILDDLINLSLLERSGKGKCVKMNRILRKMALKISLQSDGSKFLAKPCEGLQDFPDSKEWEDASRISLMNNQLCTLPKSLRCHNLSTLLLQRNNGLSAIPFPFFNSMHLLRVLDLHGTGIMLLPSSISKLIHLRGLYLNSCPHLIGLLPEIRALTKLELLDIRRTKIPFRHIGSLIWLKCLRISLSSFSMGIKLGSISAFVSLEEFCVDDDVSVEKHYKYLKDVTKEVITLKKLTSVQFCFPTVDSLDLFVHRSREWKKISHFSFQFSVGHQDSTSSHFLKSSDYRSLNCLKLVNGGGRHPVITKVLMVTDAFGLINHKGVSTLSDFGIHNMKNMLVCSVEGCNEIRTIICGNGVANSVLENLDILYIKNVPKLRSIWQGPVPEGSLAQLTTLTLTKCPELKKIFSNGMIQQLSKLQHLKVEECHQIEEIIMDSENQVLEVDALPRLKTLVLIDLPELRSIWVDDSLEWPSLQRIQISMCYMLTRLPFNNANAIRLRHIQGQQSWWEALVWEGDPIKQRLQSLCILN* 1905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1483 1904 SMART LRR_typ_2 374 398 IPR003591 -
Vvi12g1483 1904 SMART LRR_typ_2 445 468 IPR003591 -
Vvi12g1483 1904 SMART LRR_typ_2 399 421 IPR003591 -
Vvi12g1483 1904 SMART LRR_typ_2 1484 1507 IPR003591 -
Vvi12g1483 1904 Gene3D - 1239 1322 IPR042197 -
Vvi12g1483 1904 Gene3D Ribonuclease Inhibitor 336 828 IPR032675 -
Vvi12g1483 1904 PRINTS Disease resistance protein signature 1110 1125 - -
Vvi12g1483 1904 PRINTS Disease resistance protein signature 1273 1287 - -
Vvi12g1483 1904 PRINTS Disease resistance protein signature 1762 1778 - -
Vvi12g1483 1904 PRINTS Disease resistance protein signature 1183 1197 - -
Vvi12g1483 1904 Gene3D - 1323 1410 IPR036388 -
Vvi12g1483 1904 SMART AAA_5 1107 1241 IPR003593 GO:0016887
Vvi12g1483 1904 Pfam NB-ARC domain 52 230 IPR002182 GO:0043531
Vvi12g1483 1904 Pfam NB-ARC domain 1095 1325 IPR002182 GO:0043531
Vvi12g1483 1904 Gene3D - 1070 1236 IPR027417 -
Vvi12g1483 1904 Gene3D Ribonuclease Inhibitor 1692 1879 IPR032675 -
Vvi12g1483 1904 Gene3D Ribonuclease Inhibitor 1426 1613 IPR032675 -
Vvi12g1483 1904 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1089 1339 IPR027417 -
Vvi12g1483 1904 Coils Coil 1027 1054 - -
Vvi12g1483 1904 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 1005 1864 - -
Vvi12g1483 1904 SUPERFAMILY L domain-like 1435 1850 - -
Vvi12g1483 1904 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 249 IPR027417 -
Vvi12g1483 1904 SUPERFAMILY L domain-like 349 816 - -
Vvi12g1483 1904 Pfam Leucine rich repeat 375 434 IPR001611 GO:0005515
Vvi12g1483 1904 ProSiteProfiles Leucine-rich repeat profile. 401 422 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1483 Vvi-Chr12 21647902 21654276 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1483 1108 1425 WRKY Transcription Factor Family AT5G45050 24.551 3.49e-09 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1483 - K13459 vvi:104881057 3784.57