Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1477 ATGGTTGATCCAGTTATTGGTGGGGCAGGAGGGGAGATATATAAAGATGGGAAACGCGTAGCGACTTTTGCCATTAGCAATATTCTTTATCTGAAGGATCTGAACAGAAACTATAAAAAGTTAATGCAGGAAGCCATGAAGCTCAAGGCAATGAGGATAGACCTAGAAATAAGAAGATTTAAGACAAAGTCATGCATAAGAGATTGGATTGCTAGGGCTTCGATTATTGAAAGACAAGTGGAACACCTAGAAACTAAATACAACAATGAAAAGAAGCATCGATGGAAATTGTTTTCCCTTGCAAATCTTAGCAAAGAGATGGAAGTGAAGTGCCAAGAAGTTTGTAGTCATAGGGAAGAGGGAGACTTTATGAAAGAAACAGCAGTCATGGAATTGCCAGAGCCTGTCCAAAGAATACCTACACTCAAACTGGAAGAAAACTCATCATTGCACAAAGTTTTACAACATGTACTGAGGTTTCTAGAGAATAAAGAAGTAAGAAGAATTGGTATCTGGGGCGAGATGGGAACTGGGAAAACCACAGTATTGAAGAACTTGAATAATCATGAAAAAGTTGCTGAAATGTTTAATATGGTCATCTATGTAACTGTCTCAAAAAAGTGGAGTGAAAAAAGGGTACAAGATGCAATCCTAAGGCGGCTAAAATTGGATGGAGAAGGTAATGCTGATGTTAACGAAGCTGCTTCGATAATATCTGAAGATTTGAAGCAAAAGAAGTGTTTGATTCTTTTGGATGAAGTAACGAACATGATTGATCTAAATAGAATAATGGGAATCGACGAGAACCCAGATAGCAAGGTAGTGTTGGTGAGTAGATATGAAGAGTTTTGTAAATGTGACATGAAGGCTGATGAGCTAGTTAATGTGAAGCGATTGCTACCTACTGAAGCTTGGAACATGTTCCAGAAAATAGTAGGCCCTTCCATTTCTAACCCCTTAATTGAACCACCGGCGAGGCGTGTGGTTGAAGAGTGTTATGGGTTGCCACTGCTGATAGACAGAGTAGCAATAACCTTCAAAAAGAAGGGGGAAAATGAAGTGCTTTGGAGGGATGGATTGGAACGGTTGAAAAGATGGGAAAGTGTCAAACTCGTTGGCATGGATGAAGTGCTGGAACGCTTACAGATTTGTTATGATGATTTGGAAGATGATGAACAGAAGTTTTGCTTTTTGTATGGTGCATTGTATCCCGAAGAAAGTGAGATATATGTAGATTACTTGTTAGAATGTTGGAAAGCTGAAGGTTTTATTAAACGTGCAAATGATTTCAGAACTGCACGCAGCAGAGGGCATTCGGTGCTGAATGAGCTTATCAAGGTATCTTTGCTGGAGAGAAGTGATAAAAGGAAATGTGTTAAGATGAATAAAGTGCTTCGGAAAATGGCGCTTAAGATCTCATCGAAAAGAACAGATTCCAAATTTTTAGTGAAGCCACCTGGGGGGCTAGAAGATTTCTCAAAGAAGGAAGAATGGGAACAAGCCCATCGGATTTCTTTGATGAATAACCAACTACGCACTTTACCAGAAACACTAGATTGTCGGAATCTGTTAACGTTGTTGCTTCAAAGAAATAGGTACTTGACTTCTATTCCTGAGTTGTTCTTCACATCTATGTGTCGTCTGAAAGTTCTAGATCTCCATGGCAGTAAGATTGTAGTACTGCCTTCATCCTTATCCAACTTGATTTACCTCAAAGGGCTCTATTTAAATTCTTGCTCTGAGTTGAAAGAAATCCCATCTAGTGTAGAAGCACTTGAGCATCTTGAGGTGTTGGATATTCGAAAGACCAAACTTAAGTTACTTCGAATTGGAAGTTTAGTATGGTTGAAGTGTTTGCGATTATCATTGTGTAATTTTGATGTGGCAAACTATACTGAAGCACAAGTGTCAAGGTTTGATTTGTTGGAGGAATTGACTATTGATGTTGGTTCATTGGAAGAAGGGTGGGACAAGATTGTAGATCCAGTAATAGAGGAGATAGTTAAGTTGAAAAAATTGACCTCTCTTAGATTTTGTTTCCCTCAGGTAGACTGCCTTGGCTTATTTGTTGAAAAAAGCCCTGTGTGGGAGGAGGATCGCCGCTTGACATTTCATTTTGCTGTTGGTTACCATGACTCCGCCGTTGCTCATGTTCTTGAGTCTATCGATAATCCAAGCTACAACATCTTGAAGTTGGCCAATGGTGATGGTGTAAATCCTATAATCATGAAGGTGCTAACGAAAACCAATGCATTGGGACTAATAGACTACAAAGGAGTTTTGAGTCTATCGGATTTTGGCATCGAGAATATGAATATGATATTTGATTGTTTGATTGAAGGATGCAGTGGAATTAAGACCATCATCTATGGTAATGGAACATCAAAGGCTGTGCTAGAATGTTTGAAAAATTTGCACATAACCAATGTCCCAGAATTGGAAAACATTTGGCAGGGGCCTGTTCATGCTGGAAGTTTGGCTCGATTAACAACTGTGACATTAAGTAATTGCCCCAAGTTGATGAAGATATTCTCTAATGGTATGATTCAACAACTTATTCAACTGATGCACTTGAGAGTTGAAGAATGCCATCGAATTGAAGAGATTATCATGGAATCTGAGAATACACAACTAGAAAACCAAGCACTTCCAAAGTTGGAGACCCTAGAACTCATTCATCTGCAACAACTAACAAGCATTTGGGTTAAAGATTCATTAGAGTGGCCATCTTTACAAGAAGTTAAAATATCTAACTGTTGCATGTTGAAGAGTTTACCTTTCAATGAGGTCAATGCAACCAAATTGAGATCCATTGAAGGGCAACAATCATGGTGGGAAGCACTAGAATGGAAAGGTGATGCCATTAAACAAAGATTACAGCCTCTTTGCATCCTCAACTAG 2901 0.3895 MVDPVIGGAGGEIYKDGKRVATFAISNILYLKDLNRNYKKLMQEAMKLKAMRIDLEIRRFKTKSCIRDWIARASIIERQVEHLETKYNNEKKHRWKLFSLANLSKEMEVKCQEVCSHREEGDFMKETAVMELPEPVQRIPTLKLEENSSLHKVLQHVLRFLENKEVRRIGIWGEMGTGKTTVLKNLNNHEKVAEMFNMVIYVTVSKKWSEKRVQDAILRRLKLDGEGNADVNEAASIISEDLKQKKCLILLDEVTNMIDLNRIMGIDENPDSKVVLVSRYEEFCKCDMKADELVNVKRLLPTEAWNMFQKIVGPSISNPLIEPPARRVVEECYGLPLLIDRVAITFKKKGENEVLWRDGLERLKRWESVKLVGMDEVLERLQICYDDLEDDEQKFCFLYGALYPEESEIYVDYLLECWKAEGFIKRANDFRTARSRGHSVLNELIKVSLLERSDKRKCVKMNKVLRKMALKISSKRTDSKFLVKPPGGLEDFSKKEEWEQAHRISLMNNQLRTLPETLDCRNLLTLLLQRNRYLTSIPELFFTSMCRLKVLDLHGSKIVVLPSSLSNLIYLKGLYLNSCSELKEIPSSVEALEHLEVLDIRKTKLKLLRIGSLVWLKCLRLSLCNFDVANYTEAQVSRFDLLEELTIDVGSLEEGWDKIVDPVIEEIVKLKKLTSLRFCFPQVDCLGLFVEKSPVWEEDRRLTFHFAVGYHDSAVAHVLESIDNPSYNILKLANGDGVNPIIMKVLTKTNALGLIDYKGVLSLSDFGIENMNMIFDCLIEGCSGIKTIIYGNGTSKAVLECLKNLHITNVPELENIWQGPVHAGSLARLTTVTLSNCPKLMKIFSNGMIQQLIQLMHLRVEECHRIEEIIMESENTQLENQALPKLETLELIHLQQLTSIWVKDSLEWPSLQEVKISNCCMLKSLPFNEVNATKLRSIEGQQSWWEALEWKGDAIKQRLQPLCILN* 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1477 966 Coils Coil 73 93 - -
Vvi12g1477 966 PRINTS Disease resistance protein signature 168 183 - -
Vvi12g1477 966 PRINTS Disease resistance protein signature 824 840 - -
Vvi12g1477 966 PRINTS Disease resistance protein signature 332 346 - -
Vvi12g1477 966 PRINTS Disease resistance protein signature 241 255 - -
Vvi12g1477 966 Gene3D - 299 389 IPR042197 -
Vvi12g1477 966 SUPERFAMILY L domain-like 492 938 - -
Vvi12g1477 966 Coils Coil 31 58 - -
Vvi12g1477 966 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 39 926 - -
Vvi12g1477 966 SMART AAA_5 165 287 IPR003593 GO:0016887
Vvi12g1477 966 Gene3D Ribonuclease Inhibitor 799 944 IPR032675 -
Vvi12g1477 966 Gene3D - 125 294 IPR027417 -
Vvi12g1477 966 FunFam Probable disease resistance protein At1g63360 385 471 - -
Vvi12g1477 966 Pfam NB-ARC domain 155 387 IPR002182 GO:0043531
Vvi12g1477 966 Gene3D Ribonuclease Inhibitor 478 693 IPR032675 -
Vvi12g1477 966 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 147 399 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1477 Vvi-Chr12 21554408 21557308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1477 165 621 WRKY Transcription Factor Family AT5G45050 21.667 7.49e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1477 - K13459 vvi:104881062 1926.37