Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1472 ATGACTGATCTAGCTGGTGGGGCTGCAGGTGAGATATATAAAGATGGGAAACGCGTAGCGACTTTTGCCTTTAGCAATATTCTTTATCTGAGGGATCTGAGCAGAAACTCTAAAAAGTTAACTCAGGAAGCCACGAATCTCAAGGAAACGAGGAAATACCTAGAAATAAGAAGATTTAAGACACAGTCAGGCATAAGAGATTGGATTGCTACGGCTTCGATTATTTTAAGGCAAGTGGAACGCCTAGAAACTAAATACAACAATGAAAAGAAGCATCGATGGAAATTGTTTTCCCTTGCAAATCTTAGCAAAGAGATGGAAGTGAAGTGCCAAGAAGTTTGTAGTCATAGGGAAAAGGGAGTCTTCATGAAAGAAACAGCAGTCATGGAATTGCCAGAGCCTGTCCAAAGAATACCTACACTCAAACTGGAAGAAAACTCGTCATTGCACAAAGTTTTACAACATGTACTGAGGTGTCTAGAGGATAAAGAAGTAAGAAGAATTGGTATCTGGGGCAAGCTGGGAACTGGGAAAACCACAGTATTGAAGAACTTGAATAATCATGCAAAAGTTGCTGAAATGTTTAATGTGGTTATCTATGTAACTGTCTCAAAAAAGTGGAGTGAAAAAAGGGTACAAGATGCAATCCTAAGGCGGCTAAAATTGGATGTAGTAGGTAATGCCAATGTTAACGAAGCTGCTTGGCTAATATCCGAAGATTTGAAGGAAAGGAAGTGTTTGATTCTTTTGGATGAAGTAACGGACATGATTGATCTAAATAGAATAATGGGAATCGACGAGAACCCAGATAGCAAGGTAGTGTTGGTGAGTAGATATGATGACTTTTGTAAATGTGTCATGAAGGCTGATGAGCTAGTTAATGTGAAGCCATTGTTACGTACTGAAGCTTGGAACATGTTCCAGAAAATAGTAGGCCCTTCCATTTCTAACCCCTTAATTGAACCACTGGCGAGGGGTGTGGTTAATGAGTGTTATGAGTTGCCACTGCTGATAGACAGAGTGGCAAAAACCTTCAAAAAGAATGGGGAGGATTCTGTGCTTTGGGATTATGGATTGGAACAGTTGAAAAGATGGGACAGTATCAAAATCTATGGCAAGGATGAAGTGCTGGAACGCTTACAGATTTGTTATGATGATTTGGAAGATGATGAACAGAAGGTTTGCTTTTTGTATGGTGCATTGCATCCCCAAGAAAGTGAGATATATGTAGATTACTTGTTAGAATGTTGGAAAGCTGGAGGTTTTATTAAACATGCAAATGATTTCAGAAGTGCACGCAACAGAGGGCATACGGTGCTGAATGAGCTTATCAAGGTATCTTTGCTGGAGAGAAGTGCTAACAGGAAATGTGTTAAGATGAATAAAATGCTTCGGAAAATGGCGCTTAAGATCTCATCAAAAAGAACAGATTCCAAATTTTTAGTGAAGCCACACGAGGGGTTAGAAGATTTCTCAAAGAAGGAAGAATGGGAACAAGCCCATCGGATTTCTTTGATGAATGACCAACTACGCACTTTACCAGAAACACTAGATTGTCGCAATCTGTTAACGTTGTTGCTTCAAAGAAATAAGTGCTTGACTTCTATTCCTGAGTTGTTCTTCAAATCTATGTGTCGTCTCCAAATTCTAGATCTCCATGGCACTAACATTGTAGTACTGCCTTCATCCTTATCCAACTTGATTTACCTCAAAGGGCTCTATTTAAATTCCTGCTCTGAGTTGAAAGAAATCCGATCTAGTGTAGAAGCACTTGAGCATCTTGAGGTGTTGGATATTCGAAAGACCAAACTTAAGTTACTTCAAATTGGAAGTTTAGTATGGTTGAAGTGTTTGCGATTATCATTGTGTAATTTTGATGTGGCAAACTATACTGAAGCACAAGTGTCAAGGTTTGATTTGTTGGAGGAATTGACTATTGATGTTGGTTCATTGGAAGAAGGGTGGGACAAGATTGTAGATCCAGTAATAAAGGAGATAGTTAAGTTGAAAAAATTGACCTTTCTTAGATTTTGTTTCCCTCAAGTAGACTGCCTTGGCTTATTTGTTGAAAAAAGCCCTGTGTGGGAGGATCCCCGCTTGATATTTCATTTTGCTGTTGGTTACCATGACTCCGCCGTTGCTCATGCTCTTGAGTCTATCGATAATCCAAGCTACAAGATCTTGAAGTTGGCCAATGGTGATGGTGTAAATCCTATAGTCATGAAGGTGCTAACGAAAACCAATGCATTGGGACTAATAGACTACAAAGGAGTTTCGAGTCTATCGGATTTTGGCATCGAGAATATGAATATGATATTTGATTGTTTGATTGAAGGATGCAGTGGAATGAAGACCATCACCTATGGTAATGGAACATCAAAGGCTGTGCTAGAATGGTTGAAAAATTTGCACATAACCAATGTCCCAGAATTGGAAAACATTTGGCAGGGGCCTGTTCATGCTGGAAGTTTGGCTCGATTAACAACTGTGACATTAAGTAATTGCCCCAAGTTGATGAAGATATTCTCTAATGGTATGATTCAACAACTTATTCAACTGACGCACTTGAGAGTTGAAGAATGCCATCAAATTGAAGAGATTATCATGGAATTTGAGAATACACAACTAGAAAACCAAGCACTTCCAAAGTTGGAGACCCTAAAACTCATTCATCTGCCACAACTAACAAGCATTTGGGCTAAAGATTCATTAGAGTGGCCATCTTTACAAGAAGTTGAGATATCTAAGTGTTTCAAGTTGAAGAGTTTACCTTTCAACAAGGTAAATGCAACCAAATTGAGATCCATTGAAGGGCAACAATCATGGTGGGAAGCACTAGAATGGAAAGGTGATGCCATTAAACAAAGATTACAACCTCTTTTCATCCCCAACCAGCTCCTTTGA 2904 0.3915 MTDLAGGAAGEIYKDGKRVATFAFSNILYLRDLSRNSKKLTQEATNLKETRKYLEIRRFKTQSGIRDWIATASIILRQVERLETKYNNEKKHRWKLFSLANLSKEMEVKCQEVCSHREKGVFMKETAVMELPEPVQRIPTLKLEENSSLHKVLQHVLRCLEDKEVRRIGIWGKLGTGKTTVLKNLNNHAKVAEMFNVVIYVTVSKKWSEKRVQDAILRRLKLDVVGNANVNEAAWLISEDLKERKCLILLDEVTDMIDLNRIMGIDENPDSKVVLVSRYDDFCKCVMKADELVNVKPLLRTEAWNMFQKIVGPSISNPLIEPLARGVVNECYELPLLIDRVAKTFKKNGEDSVLWDYGLEQLKRWDSIKIYGKDEVLERLQICYDDLEDDEQKVCFLYGALHPQESEIYVDYLLECWKAGGFIKHANDFRSARNRGHTVLNELIKVSLLERSANRKCVKMNKMLRKMALKISSKRTDSKFLVKPHEGLEDFSKKEEWEQAHRISLMNDQLRTLPETLDCRNLLTLLLQRNKCLTSIPELFFKSMCRLQILDLHGTNIVVLPSSLSNLIYLKGLYLNSCSELKEIRSSVEALEHLEVLDIRKTKLKLLQIGSLVWLKCLRLSLCNFDVANYTEAQVSRFDLLEELTIDVGSLEEGWDKIVDPVIKEIVKLKKLTFLRFCFPQVDCLGLFVEKSPVWEDPRLIFHFAVGYHDSAVAHALESIDNPSYKILKLANGDGVNPIVMKVLTKTNALGLIDYKGVSSLSDFGIENMNMIFDCLIEGCSGMKTITYGNGTSKAVLEWLKNLHITNVPELENIWQGPVHAGSLARLTTVTLSNCPKLMKIFSNGMIQQLIQLTHLRVEECHQIEEIIMEFENTQLENQALPKLETLKLIHLPQLTSIWAKDSLEWPSLQEVEISKCFKLKSLPFNKVNATKLRSIEGQQSWWEALEWKGDAIKQRLQPLFIPNQLL* 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1472 967 Pfam NB-ARC domain 150 386 IPR002182 GO:0043531
Vvi12g1472 967 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 38 924 - -
Vvi12g1472 967 Coils Coil 30 57 - -
Vvi12g1472 967 Gene3D - 298 388 IPR042197 -
Vvi12g1472 967 Gene3D Ribonuclease Inhibitor 744 947 IPR032675 -
Vvi12g1472 967 Gene3D Ribonuclease Inhibitor 441 695 IPR032675 -
Vvi12g1472 967 PRINTS Disease resistance protein signature 331 345 - -
Vvi12g1472 967 PRINTS Disease resistance protein signature 167 182 - -
Vvi12g1472 967 PRINTS Disease resistance protein signature 822 838 - -
Vvi12g1472 967 PRINTS Disease resistance protein signature 240 254 - -
Vvi12g1472 967 SUPERFAMILY L domain-like 481 936 - -
Vvi12g1472 967 Gene3D - 123 295 IPR027417 -
Vvi12g1472 967 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 398 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1472 Vvi-Chr12 21436780 21439683 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1472 157 298 WRKY Transcription Factor Family AT4G12020 28.758 8.45e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1472 - K13459 vvi:104881064 1931.76