Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1455 ATGTCTGAAGAGGCTGGGCCGATGCTAGTTGTTTACGATGACCCTTCAGATCAAAGATCTTTGTCTTTGGATGATACGAGCAGCACAGAGGAATCACCTGATGAAACGAGGCTTTCGCTAGAAACCACAACTGATGCAATCCCATATATTGGCCAAAGATTTGTTACTCATGATGCAGCTTACGAATTTTATAGTGAATTTGCCAAAAGATGCGGCTTCTCAATCCGGCGTCACCGCACAGAAGGAAAAGATGGTGTTGGCAAAGGACTCACGAGACGCTACTTTGTCTGTCATCGTGCAGGCAACACACCTATCAAGACCTCAAATGAAAGTAAACCTCAAAGAAATAGGAAATCCTCACGGTGTGGATGTCAAGCTTACTTGAGGATAAGCAAGACAACAGAATTAGGAGCACCAGAATGGCGTGTCACAGGCTTTGCAAACCATCACAATCATGAACTCCTAGAACCAAACCAAGTTCGTTTCCTTCCTGCGTATCGCACCATATCAGATGCAGATAAGAGTCGGATTTTAATGTTTGCCAAAACGGGAATTTCAGTACAGCAAATGATGAGGCTCATGGAGCTTGAGAAGTGTGTGGAGCCTGGATATTTGCCATTTACTGAGAAGGATGTGAGGAATCTGCTTCAGTCATTCAGGAAACTGGATCCGGAGGATGAGAGCATCGACTTGTTAAGAATGTGCAGAAACATCAAGGATAAGGATCCAAACTTCAAATTCGAGTTCACACTAGATCCAAGCAACAGGTTAGAGAATATTACTTGGTCATATGCTTCATCAATCCAGTCATATGATGTCTTTGGTGATGCAGTGGTGTTTGATACAACACATCGCTTGACTGCTTTTGACATGCCGCTTGGGATATGGGTTGGAATAAACAACTATGGTATGCCTTGCTTTTTTGGCTGTGTGCTTCTACGAGAGGAAAATTTGAGATCTTTCTCATGGGCATTGAAGGCATTCTTGGGGTTCATGAATGGGAAGGCTCCACAAACGATATTAACTGACCAAAATATGTGTCTCAAAGATGCCATAGCCATGGAAATGCCTACTACTAAACATGCACTTTGCATTTGGCTGATTGTGGCAAAATTTCCATCCTGGTTTAATGCTGTTTTGGGTGAACGATACAATGAGTGGAAGGCTGAGTTCTATCGACTGTATAATCTGGAGTCTGTTGAAGATTTTGAACTAGGATGGAGGGACATGGTCAATTTGTTTGGATTACACACTAACCGGCATGTGGCCAATTTGTTTGCCTTACGGTCACTTTGGGCGTTGCCATACTTGAGAACCCATTTCTTTGCGGGAATGACCACAACTGGCCAATCAAAGTCAATTAATGCTTTCATTCAACGGTTTTTGAGTGCACAAACCCGGCTTGCACACTTTGTAGAACAAGTAGCTGTTGCTGTAGATTTCAAAGATCAGGCTGGAGAGCAACAAACAATGCAACAGAATCTCCAAAACCTTTGCCTGAAGACAGGGGCGCCAATGGAATCCCATGCTGCCACAATCCTCACACCTTACGCCTTTACTAAGCTCCAAGATCAAATTGTTTATGCTACCCACTATGCTTCGTTTCCCATGGAAGATGGTTTTCTTGTGAGACACCATACCAAACTAGAGGGAGGTCGGAAAGTGTATTGGGTTCCAAGGGAAGGCATCATAAGTTGCAGCTGCCATCAGTTTGACTTCTCTGGAATCCTATGCAGGCATGCCCTTCGAGTTCTCTCAACAGGAAATTGCTTCCAAATACCAGAGAGGTATCTTCCTGTCCGCTGGCGGCGCATTAGTACATCATCCACAAAGCTCTTTCAGACTATCCCAAGTGACCATGCAGAAAAAGTCCAGTTATTGCAGAGCATGGTATCAACTCTTGTAACCGAATCAGCCAAGTCCAAGGAGAGACTGGACACTGCAACCGAGCAAGTTTCCATCCTTCTGTCCCGGATAAGAGAGCAGCCAGTTTCAATACAAGGTACAAGAGACATTCCCATCCATAGGAATCTTTGA 2037 0.4413 MSEEAGPMLVVYDDPSDQRSLSLDDTSSTEESPDETRLSLETTTDAIPYIGQRFVTHDAAYEFYSEFAKRCGFSIRRHRTEGKDGVGKGLTRRYFVCHRAGNTPIKTSNESKPQRNRKSSRCGCQAYLRISKTTELGAPEWRVTGFANHHNHELLEPNQVRFLPAYRTISDADKSRILMFAKTGISVQQMMRLMELEKCVEPGYLPFTEKDVRNLLQSFRKLDPEDESIDLLRMCRNIKDKDPNFKFEFTLDPSNRLENITWSYASSIQSYDVFGDAVVFDTTHRLTAFDMPLGIWVGINNYGMPCFFGCVLLREENLRSFSWALKAFLGFMNGKAPQTILTDQNMCLKDAIAMEMPTTKHALCIWLIVAKFPSWFNAVLGERYNEWKAEFYRLYNLESVEDFELGWRDMVNLFGLHTNRHVANLFALRSLWALPYLRTHFFAGMTTTGQSKSINAFIQRFLSAQTRLAHFVEQVAVAVDFKDQAGEQQTMQQNLQNLCLKTGAPMESHAATILTPYAFTKLQDQIVYATHYASFPMEDGFLVRHHTKLEGGRKVYWVPREGIISCSCHQFDFSGILCRHALRVLSTGNCFQIPERYLPVRWRRISTSSTKLFQTIPSDHAEKVQLLQSMVSTLVTESAKSKERLDTATEQVSILLSRIREQPVSIQGTRDIPIHRNL* 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1455 678 MobiDBLite consensus disorder prediction 1 42 - -
Vvi12g1455 678 Pfam SWIM zinc finger 559 587 IPR007527 GO:0008270
Vvi12g1455 678 Pfam FAR1 DNA-binding domain 62 155 IPR004330 -
Vvi12g1455 678 Pfam MULE transposase domain 278 370 IPR018289 -
Vvi12g1455 678 SMART 26again6 564 591 IPR006564 GO:0008270
Vvi12g1455 678 ProSiteProfiles Zinc finger SWIM-type profile. 556 589 IPR007527 GO:0008270
Vvi12g1455 678 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 44 653 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1455 Vvi-Chr12 21219120 21229876 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vvi12g1455 MULE 4.1e-18 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1455 - - vvi:100250520 1384.39