Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1452 ATGACGGAAGAAGCAGCTACAGCAGCATTATTTAAGGTATACGAGATAGTTGCTCGTGGGATTGATCTAAAAGGGAACTATAAGAGGTTGAGACAGGAAGCAAAAAAGCTCAAGGCCATAAGGGATGCTATAGAGACAGAGATAAGCAAAGATCGGATAACACCAGCCACAAGAGAATGGATTGCTAAGGTGAAGATGATTGAAAGTGAAGTGAAAGAGCTAAAAACCAAATACAAAAATGAAATGGGGCACCCTTGGAGATTGGTTCGTATTTGGGCTTATGCAAGACTTAGCACAGACGTAGCAGAGAAGTACAACCAAGTTCATAGTCTTTGGGAGGAGGGAAATCTTAAAAGGGAAGAGCTCGACGCAGAATTGCCAGAGCCTGTCAGGAAAAGACATGCACCTAGAATTGAAGAGAACTCAGCATTGCACATGGCTGTACAAGAAATATTGAGCTTTTTGGAGGATGAACAAATACAAAGAATTGGAGTCTGGGGAACAGTTGGAACTGGGAAAACCACAATAATGCAGAACTTGAACAATCATGAACAAATTGCTAAAATGTTTGATATTGTCATTTGGGTGACCGTCTCAAAGGAGTGGAGCATAGAAAAGTTGCAAGATGCAATCATGCGCCAGCTAAAGTTGGACATGGAACGTTTTGCTGACATTGAGGAAAATGCTCGGAGAATATCTGAAGAGTTGAAGGAAAAGAAGTATTTGGTTCTTTTGGATGAAGTCCAAGAGAATATTGATCTGAATGCAGTTATGGGAATCCCCAACAACCAAGATAGCAAGGTGGTGTTGGCAAGCAGAAACAGATGTGTCTGTTATGAAATGGAAGCTGATGAGCTGATCAATGTGAAGCGATTGTCACCTGCTGATGCTTGGAACATGTTCCAGGAAAAAGTCGGTCATCCAATTTCTTCCCCTTTAATTAAACCAATAGCTGAGCAAGTGGTTAAAGAATGTGATGGTTTGCCGCTGCTGATAGACAGGATAGGGAGAACCTTTAGAAAGAAGGGGAAAGATGTTTCTCTTTGGAGGGATGGATTGAACCGTCTGCGAAGATGGGAGAGTGTCAAAACTGAAGGCATGGATGAAGTGCTTGATTTCTTAAAGTTTTGTTACGAAGAATTGGACAGAAATAAAAAAGATTGTTTCTTGTATGGTGCATTGTATCCTGAAGAATGTGAGATTTATATTGATTACCTGCTAGAATGTTGGAATGCTGAAGGTTTAATTCATGATGCAGATGAGTTAGTTGACAATACAAATGTGTTTAGAGATGCACGTGACAAAGGGCATGCAATATTGGATGCTCTTATTGATGTATCATTGTTAGAGAGAAGTGACGAGAAGAAATGTGTTAAGATGAACAAGGTGCTTCGAAAAATGGCCCTTAAAATCTCATCACAAAGCAACGGTTCCAAGTTTTTGGTGAAGCCATGTGAGGGATTACAAGATTTCCCAGACAGGAAAGAGTGGGAAGATGCAAGTCGAATCTCTTTGATGGGTAACCAGCTATGTACTTTACCAGAATTTCTACACTGTCACAATCTCTCAACACTGTTGCTCCAGATGAATAATGGTTTGATTGCTATTCCTGAGTTCTTCTTCGAATCTATGCGTAGTCTTCGAGTTCTGGATCTGCATGGGACTGGGATTGAATCATTACCTTCATCTATATCCTATCTGATTTGTCTTAGAGGGCTCTATTTAAATTCTTGCCCCCACTTGATACAACTCCCACCTAACATGAGAGCACTTGAGCAGCTTGAGGTGCTTGATATTCGAGGAACTAAACTTAATTTACTTCAAATTGGGAGTTTAATATGGTTGAAGTGCTTGCGAATATCGTTGTCTAGTTTTTTCAGGGGAATCCGAACTCAAAGGCAATTGGGGAGCATCTCAGCGTTTGTTTCATTGGAAGAATTTTGTGTTGATGATGATCTATCCGAACAATGTTGGGATGAATTTTTAATGATTGTCATGGAGGAGGTGGTTACCTTGAAAAAGTTGACTTCTCTTCGGTTTTGCTTCCCTACAGTGGACTTCCTTAAGTTGTTTGTTCAAAGAAGCCCAGTATGGAAGAAGAATTCGTGCTTCACATTTCAATTTTGTGTTGGTTACCAGGGCAATACCTACTCTCAAATTCTCGAGTCATCTGATTATCCCAGCTATAACTGCCTCAAATTGGTCAATGGTGAAGGAATGCATCCTGTAATCGCGGAGGTACTAAGGATGACACATGCATTCAAATTAATTAACCATAAGGGAGTTTCAACACTATCAGATTTTGGTGTCAACAACATGGAAAACATGTTAGTTTGTTCAGTGGAAGGATGCAATGAAATTAGAACCATAGTATGCGGTGACAGAATGGCAAGCAGTGTGCTAGAGAACTTGGAAGTTTTGAACATCAACAGTGTCTTGAAATTGAGAAGCATATGGCAAGGGTCTATTCCCAATGGAAGTCTAGCTCAGCTAACCACGTTGACATTAACTAAATGCCCAGAGTTGAAGAAGATATTTTCCAATGGCATGATTCAACAGCTCCCTGAACTGCAGCACTTGAGGGTGGAAGAATGTAATCGAATTGAAGAAATAATAATGGAATCCGAGAACCTTGAGCTAGAAGTGAATGCACTTCCAAGACTGAAGACTCTAGTACTCATTGATCTCCCAAGGTTGAGAAGCATATGGATTGATGATTCATTGGAGTGGCCTTCTTTACAAAGGATTCAGATAGCTACATGTCACATGTTGAAGAGATTGCCTTTCAGTAATACCAATGCACTTAAACTGAGATTGATCGAAGGACAACAGTCATGGTGGGAAGCGCTAGTATGGGAAGATGATGCCTTCAAACAAAATCTACACTCCTTTTGCATCCTCAGCTAG 2907 0.4045 MTEEAATAALFKVYEIVARGIDLKGNYKRLRQEAKKLKAIRDAIETEISKDRITPATREWIAKVKMIESEVKELKTKYKNEMGHPWRLVRIWAYARLSTDVAEKYNQVHSLWEEGNLKREELDAELPEPVRKRHAPRIEENSALHMAVQEILSFLEDEQIQRIGVWGTVGTGKTTIMQNLNNHEQIAKMFDIVIWVTVSKEWSIEKLQDAIMRQLKLDMERFADIEENARRISEELKEKKYLVLLDEVQENIDLNAVMGIPNNQDSKVVLASRNRCVCYEMEADELINVKRLSPADAWNMFQEKVGHPISSPLIKPIAEQVVKECDGLPLLIDRIGRTFRKKGKDVSLWRDGLNRLRRWESVKTEGMDEVLDFLKFCYEELDRNKKDCFLYGALYPEECEIYIDYLLECWNAEGLIHDADELVDNTNVFRDARDKGHAILDALIDVSLLERSDEKKCVKMNKVLRKMALKISSQSNGSKFLVKPCEGLQDFPDRKEWEDASRISLMGNQLCTLPEFLHCHNLSTLLLQMNNGLIAIPEFFFESMRSLRVLDLHGTGIESLPSSISYLICLRGLYLNSCPHLIQLPPNMRALEQLEVLDIRGTKLNLLQIGSLIWLKCLRISLSSFFRGIRTQRQLGSISAFVSLEEFCVDDDLSEQCWDEFLMIVMEEVVTLKKLTSLRFCFPTVDFLKLFVQRSPVWKKNSCFTFQFCVGYQGNTYSQILESSDYPSYNCLKLVNGEGMHPVIAEVLRMTHAFKLINHKGVSTLSDFGVNNMENMLVCSVEGCNEIRTIVCGDRMASSVLENLEVLNINSVLKLRSIWQGSIPNGSLAQLTTLTLTKCPELKKIFSNGMIQQLPELQHLRVEECNRIEEIIMESENLELEVNALPRLKTLVLIDLPRLRSIWIDDSLEWPSLQRIQIATCHMLKRLPFSNTNALKLRLIEGQQSWWEALVWEDDAFKQNLHSFCILS* 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1452 968 SUPERFAMILY L domain-like 479 940 - -
Vvi12g1452 968 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 139 391 IPR027417 -
Vvi12g1452 968 Gene3D Ribonuclease Inhibitor 756 951 IPR032675 -
Vvi12g1452 968 Gene3D Ribonuclease Inhibitor 446 690 IPR032675 -
Vvi12g1452 968 Gene3D - 120 288 IPR027417 -
Vvi12g1452 968 Coils Coil 27 47 - -
Vvi12g1452 968 Gene3D - 291 382 IPR042197 -
Vvi12g1452 968 Pfam NB-ARC domain 148 380 IPR002182 GO:0043531
Vvi12g1452 968 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 28 928 - -
Vvi12g1452 968 FunFam Probable disease resistance protein At1g61300 127 286 - -
Vvi12g1452 968 PRINTS Disease resistance protein signature 162 177 - -
Vvi12g1452 968 PRINTS Disease resistance protein signature 235 249 - -
Vvi12g1452 968 PRINTS Disease resistance protein signature 826 842 - -
Vvi12g1452 968 PRINTS Disease resistance protein signature 325 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1452 Vvi-Chr12 21191665 21194571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1452 143 332 WRKY Transcription Factor Family AT4G12020 28.431 8.55e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1452 - K13459 vvi:104881039 1932.92