Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1443 ATGGCCTTAGAAGCAGCAGCTGGAGCAGCAGTGGAAACAACAGTGACTGAGGTATATAGAGATGGGCGAAGCTTATTAATTTGGTCTGGTCGTAAATTTGGTTATCGGAAGAATCTAAAAAGAAACCATGAAGATTTAATGCAGAAAGCTAGAGAGCTTTGGGAACTGAGAAATGGCATAAGGGAAGGAATAAGCCAAAATAGAATCAGGCCAGACACAACAGAATGGATGGCTAACGTGGAGATGAATGAAAGTGAAGTGATAGAACTAGACACCAAATACAATGATAGAAAAAATCACCCATGGAAATTGTTTCGTTTTGGGAAGGGTGCTAGTCTTAGCAAAGACATGGCTGAGAAGTACAAGCAAGTTCTTAGTCTTTGGGAAGAGGGAAAACGTAAAAGAGGAGTGTTGGATGCGGAACTGCCAAAGCGTGTCGTGGGAATATGTCCAGCCAAAATAGAATATAAATCACCACTGCACAAACATGTAGAAGGAGCAGTGCATTTTCTAGAGGATCCTGAAATAAAAAGAATAGGAATCTGGGGAATGGTGGGAACCGGGAAGACCACAATAATTGAAAACTTGAACACTCATGACAATATTAACAAAATGTTTGATATTGTCATTCGGGTAACTGTCCCAAAGGAGTGGAGCGAGGTAGGGTTGCAACAGAAAATCATGCGTCGGCTAAATTTGAATATGGGAGGCCCTACTGACATTGAGGAAAATACACAGATAATATTCGAAGAGTTGAAGAAAAAGAAGTGTTTGATTCTTTTAGATGAAGTTTGTCATCCTATTGAGTTAAAAAATGTAATTGGAATCCATGGCATCCAAGACTGCAAGGTGGTGTTGGCAAGTAGAGACCTAGGCATTTGTAGGGAGATGGATGTTGATGAGACAATCAATGTGAAACCATTGTCATCAGATGAAGCTTTCAACATGTTCAAGGAAAAAGTAGGCGAGTTTATTTATAGCACCCCAAGAGTTTTACAAGTGGGCCAGCTGGTGGTTAGAGAGTGTGGGGGTTTGCCACTACTGATAGACAAATTTGCAAAAACCTTCAAAAGGATGGGGGGGAATGTTCAGCATTGGAGGGATGCACAGGGAAGTTTGCGAAATTCGATGAATAAAGAAGGAATGGATGCAGTACTTGAACGTCTCGAGTTTTGCTATAATAGTTTGGATAGTGATGCAAAGAAGGATTGTTTTCTGTATTGTGCATTATATTCTGAAGAATGTGAGATTTATATACGTTGTTTGGTAGAATATTGGAGAGTAGAAGGTTTTATTGATAATAATGGGCATGAAATATTGAGTCATCTTATCAATGTCTCATTGTTAGAGAGCAGTGGGAACAAGAAAAACGTTAAGATGAACAAAGTGCTTCGGGAAATGGCCTTAAAAATATTATCAGAAACTGAACATTTGAGATTTTTGGCAAAGCCCCGTGAGGGGTTGCATGAGCCGCCAAATCCTGAAGAATGGCAACAAGCAAGTCGCATCTCTTTGATGGATAACGAACTGCACAGTTTACCAGAAACTCCAGACTGTCGTGATCTTGTAACATTGTTACTTCAAAGGTATAAGAACTTGGTTGCCATTCCTGAGTTATTCTTTACATCAATGTGTTGTCTTCGAGTTCTGGATTTGCATGGCACTGGCATCAAATCATTACCTTCATCTCTATGCAACTTGATTGTTCTTAGAGGGCTTTATCTGAATTCCTGCAACCATTTGGTAGGACTACCAACTGACATAGAAGCACTTAAGCAACTTGAGGTGCTTGATATCCGAGGGACTAAACTCAATTTATGTCAAATTAGAACTTTAGCCTGGTTGAAGTTCTTACGAATATCATTGTCTAATTTTGGCAAGGGAAGCCATACACAGAATCAATCAGGATATGTTTCAAGCTTTGTTTCCTTGGAAGAGTTCCGTATTGACATTGATTCGTCCTTGCAATGGTGTGCTGGGAACGGAAATATTATTACGGAGGAGGTGGCTACCTTGAAAAAGTTGACTTCTCTTCAATTTTGCTTCCCAACAGTGCAGTGCCTTGAGATCTTTATCAGGAACAGCTCAGCATGGAAAGATTTCTTTAACGGGACCAGCCCAGCAAGGGAAGATCTCTCTTTCACATTCCAATTTGCTGTTGGCTATCATAGCTTAACCTGCTTTCAAATTCTTGAGTCTTTTGATGATCCAAGCTACAATTGTCTGGAAGTCATCAATGGCGAAGGCATGAATCCTGTAATCTTGAAGGTACTTGCAAAAACTCATGCATTTAGACTAATTAACCACAAGGGAGTTTCAAGGCTATCAGATTTTGGTATCGAGAACATGAATGATCTCTTTATTTGTTCAATTGAAGGATGCAATGAAATTGAAACCATCATCAATGGTACTGGAATAACAAAAGGCGTATTGGAATACTTGCGACATTTGCAGGTAAACAATGTCTTGGAATTGGAGAGCATTTGGCAGGGCCCTGTTCATGCTGGAAGTTTGACTCGTCTCAGGACTCTAACCTTAGTTAAATGTCCACAGCTGAAGAGGATATTCTCTAATGGCATGATTCAGCAGCTTTCTAAGCTGGAGGACTTGAGAGTTGAAGAATGTGACCAAATTGAAGAGATAATAATGGAATCGGAGAACAATGGGTTAGAATCCAACCAGCTTCCAAGACTGAAGACCCTAACACTCCTTAATCTCAAAACACTGACAAGCATTTGGGGTGGTGATCCACTGGAGTGGCGATCTTTACAAGTGATTGAAATATCTAAGTGTCCCAAGTTGAAGAGATTGCCTTTCAACAATGACAATGCAACCAAATTGAGAAGCATCAAAGGCCAGCGGGAGTGGTGGGAAGCACTAGAATGGAAAGACGATGCTGCCATTGAACAGAGACTAGAGTCTCTTTGCATCTTAAACTAG 2940 0.4034 MALEAAAGAAVETTVTEVYRDGRSLLIWSGRKFGYRKNLKRNHEDLMQKARELWELRNGIREGISQNRIRPDTTEWMANVEMNESEVIELDTKYNDRKNHPWKLFRFGKGASLSKDMAEKYKQVLSLWEEGKRKRGVLDAELPKRVVGICPAKIEYKSPLHKHVEGAVHFLEDPEIKRIGIWGMVGTGKTTIIENLNTHDNINKMFDIVIRVTVPKEWSEVGLQQKIMRRLNLNMGGPTDIEENTQIIFEELKKKKCLILLDEVCHPIELKNVIGIHGIQDCKVVLASRDLGICREMDVDETINVKPLSSDEAFNMFKEKVGEFIYSTPRVLQVGQLVVRECGGLPLLIDKFAKTFKRMGGNVQHWRDAQGSLRNSMNKEGMDAVLERLEFCYNSLDSDAKKDCFLYCALYSEECEIYIRCLVEYWRVEGFIDNNGHEILSHLINVSLLESSGNKKNVKMNKVLREMALKILSETEHLRFLAKPREGLHEPPNPEEWQQASRISLMDNELHSLPETPDCRDLVTLLLQRYKNLVAIPELFFTSMCCLRVLDLHGTGIKSLPSSLCNLIVLRGLYLNSCNHLVGLPTDIEALKQLEVLDIRGTKLNLCQIRTLAWLKFLRISLSNFGKGSHTQNQSGYVSSFVSLEEFRIDIDSSLQWCAGNGNIITEEVATLKKLTSLQFCFPTVQCLEIFIRNSSAWKDFFNGTSPAREDLSFTFQFAVGYHSLTCFQILESFDDPSYNCLEVINGEGMNPVILKVLAKTHAFRLINHKGVSRLSDFGIENMNDLFICSIEGCNEIETIINGTGITKGVLEYLRHLQVNNVLELESIWQGPVHAGSLTRLRTLTLVKCPQLKRIFSNGMIQQLSKLEDLRVEECDQIEEIIMESENNGLESNQLPRLKTLTLLNLKTLTSIWGGDPLEWRSLQVIEISKCPKLKRLPFNNDNATKLRSIKGQREWWEALEWKDDAAIEQRLESLCILN* 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1443 979 PRINTS Disease resistance protein signature 342 356 - -
Vvi12g1443 979 PRINTS Disease resistance protein signature 251 265 - -
Vvi12g1443 979 PRINTS Disease resistance protein signature 178 193 - -
Vvi12g1443 979 PRINTS Disease resistance protein signature 836 852 - -
Vvi12g1443 979 SUPERFAMILY L domain-like 463 942 - -
Vvi12g1443 979 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 408 IPR027417 -
Vvi12g1443 979 Gene3D - 307 397 IPR042197 -
Vvi12g1443 979 Gene3D - 141 304 IPR027417 -
Vvi12g1443 979 Gene3D Ribonuclease Inhibitor 757 966 IPR032675 -
Vvi12g1443 979 Pfam NB-ARC domain 163 394 IPR002182 GO:0043531
Vvi12g1443 979 Gene3D Ribonuclease Inhibitor 438 698 IPR032675 -
Vvi12g1443 979 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 44 938 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1443 Vvi-Chr12 21102291 21105230 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1443 175 491 WRKY Transcription Factor Family AT5G45050 23.529 1.03e-07 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1443 - K13459 vvi:104881040 1533.08