Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1438 ATGTCCTTAGACAAGCAGTGTTTGGCTCCTCAGCCTGGTGAATGGGTGAAGGGGAAGATGGTTGGATCAGGATCTTTCGGGACCGTTCATTTGGCCATGAGCAAAGCCACTGGAGGTCTTTTTGTTGTGAAGTCTGCACAGGAGGGACCTGGTCTCAAGTCTCTAGAGAATGAGGCTACCATGCTTGAGAAACTACATTCTCCATATATTGTCCGGTGTATGGGGAGGGACTCCTTTGTTGGCAGGCAAGGGGAAGGAAGACTCAATCTCTTCATGGAGTACATGGCTGGAGGGAGTTTGAGCAATGTTGCAGACAAGTTTGGTGGGATCCTGGAGGAGAAGGTGATTCGATTGTACACGAGAGAGATTCTCCAGGGACTCGAGTACCTTCACAAGAATGAGATTGTGCATTGTGATCTCAAGTGCCAAAATGTGCTCTTGGGATCGAGTGGAAATGTCAAACTCGCAGACTTTGGATGTGCCAAGAGGCTCAGGGACCTGAAATCCAAGGGGGCTTCAATGACTTCCTGGCAATCAATTAGCGGGACTCCTCTGTGGATGGCCCCTGAAGTTTTGAGGAATGAGGGTGTGACGCTTGCTTCAGACATTTGGTCCTTAGGATGCACCATCATTGAGATGGCCACAGGAAGGCCTCCATGGAGTGGTGAGGTTTCTAACCCAATGGCTGCAGTTATGATGATAGCATGTAGCAATAAGATACCTCAGATCCCAACTCATCTTTCAAAGGAGGGGTTGGATTTTTTGGCCAAATGCCTGGATAGGAACCCAGCAAAGAGGTGGACAGCCGAGGAATTGCTTAGCCATCCCTTTGTTTCAAGGCATTTGGAGAGGGAGAATTTGAGAAAGGTAGATTTTGACTCACCCAAAAGCATCCTAGATGTCAGAAACCATGAGGATGGTTCTGACTCAGATCAACCAGAGTGTGTTGATGGATGTGGGTTTTTTCGAAGAATCTCATTCTCAAAAAGGCATGGCTGCAAAGGAAAGAAAATGAACAAAAAATCACGAAAGCAGTTAGTAGAAGGTGACTTGGCTTCATCTGGCAATTGGGTTACTGTTAGATCAGGATGA 1092 0.4716 MSLDKQCLAPQPGEWVKGKMVGSGSFGTVHLAMSKATGGLFVVKSAQEGPGLKSLENEATMLEKLHSPYIVRCMGRDSFVGRQGEGRLNLFMEYMAGGSLSNVADKFGGILEEKVIRLYTREILQGLEYLHKNEIVHCDLKCQNVLLGSSGNVKLADFGCAKRLRDLKSKGASMTSWQSISGTPLWMAPEVLRNEGVTLASDIWSLGCTIIEMATGRPPWSGEVSNPMAAVMMIACSNKIPQIPTHLSKEGLDFLAKCLDRNPAKRWTAEELLSHPFVSRHLERENLRKVDFDSPKSILDVRNHEDGSDSDQPECVDGCGFFRRISFSKRHGCKGKKMNKKSRKQLVEGDLASSGNWVTVRSG* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1438 363 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Vvi12g1438 363 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 15 305 - -
Vvi12g1438 363 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Vvi12g1438 363 FunFam MAP kinase kinase kinase18 9 326 - -
Vvi12g1438 363 SMART serkin_6 15 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1438 363 Pfam Protein kinase domain 17 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1438 363 ProSiteProfiles Protein kinase domain profile. 15 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1438 363 SUPERFAMILY Protein kinase-like (PK-like) 13 292 IPR011009 -
Vvi12g1438 363 Gene3D Transferase(Phosphotransferase) domain 1 14 316 - -
Vvi12g1438 363 CDD STKc_MAPKKK 14 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1438 Vvi-Chr12 21019776 21020867 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1438 15 302 MAP Kinase Kinase Kinase AT5G55090 43.051 3.89e-69 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vvi12g1438 Pkinase 2.3e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1438 K20716 - vvi:100243768 742.651