Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1433 ATGGGCTGCATTTGCTCAAAAGGAAGTTCTGTCAACGAGTATGTTGAGAAGAATGCTAGGGACAAAGAATTGAGCAAAAAATCGTCTAAGCGCCTTGTTGCTTCCTCAAGGAGAGAGGGAGTTGTAGTGGAGGGTTATGGGGGAAGCAATGATGCAACCGCCCGGCTGATACCGACTCAATCAGCCGAGGACAACGCGGCATCCACCCCAGTTTCATGGGATAAGAGGCAGAAGAAATCAATGGCTATTGACAATTCCACGAGGGCCGCGGTTCAAAAACCCTCAACAATGGAAGTTGGGATGAATGCTGGACAACCCCAGATGACTAGGATTGTCAGCATGGGAAACGGGGTTGAAGCAGCTCAAGCTGCTGCTGGGTGGCCATCTTGGCTGACTGCAGTGGCTGCAGAGGCCATCGATGGGTGGGTGCCCCGAAAGGCTGACTCATTTGAGAGGTTGGACAAGATTGGACAAGGAACTTACAGCAGTGTGTACAAGGCACGTGACCTTGAGACTGGAAAAACCGTTGCATTGAAGAAGGTGAGGTTTGCAAACATGGACCCAGAAAGTGTTCGGTTTATGGCAAGAGAAATCCATATTCTGCGTAGGCTTGATCACCCAAATGTCATGAAGCTTGAAGGTCTGATCACTTCAAGGATGTCTGGTAGTTTATATCTTGTATTTGAATATATGGACCATGATCTTGCTGGACTTGCATCATCACCCAAGATCAAGTTTACTGAACCGCAGATAAAATGTTATATGCAACAGCTACTTCGTGGACTTGAACACTGCCACAGTCGTGGGGTTCTTCACCGTGACATCAAAGGTTCAAACCTTCTTATTGATAATAATGGAAATCTCAAGATTGGTGATTTTGGGCTGGCGACATTTTTCCAACCATACCAAAAGCAGCCTCTAACGAGTCGTGTAGTTACTTTGTGGTACCGGCCACCTGAGCTTTTGCTTGGTGCTACATCATATGGAGTTGCTGTGGATTTGTGGAGTGCTGGTTGCATTCTTGCTGAACTGTATGCAGGAAAGCCCATCATGCAAGGAAGAACAGAGGTGGAGCAACTGCATAGGATCTTCAAACTCTGTGGCTCACCTTCTGAAGAGTATTGGAAGAGAGCAAAACTTCCACATGCAACCATTTTCAAACCTCAGCATCCTTACAGGCGTTGTGTTGCTGAAACTTTTAGTGACTTCCCTTCACCAGCCTTGTCCCTTATGGATGTCCTTCTTGCAATAGAGCCTGAGCGCCGGGGATCAGCTTCTTCTGCACTTCATAATGAGTTCTTCACAACAAAGCCTCTTCCCTGTGACACATCAAATTTGCCCAAGTACCCACCAAGCAAGGAGTTCGATGCCAAGCTTCGAGAAGAGGAAGCTAGAAGGCGAAGAGCAGCTGGCAGTAAAGGGCGTGGACACGAGTCTACCAGAAAGGTTTCTAGAGAATCTAAAGCAGTGCCAGCACCAGATGCCAATGCTGAGTTGCAGGTGTCCATACAGCGTCGAGAGCAATCAAACCCCAAAAGCAAAAGCGAAAAGTTCATCCCAGAAGAGGATGGTGGGTCTGGCTTCCCCATTGAGCCTACCAAAGGGACAACAAGGAATGGTTTCTCCCACTCTGGCAAGTCAATTCACCCCACTGCATTTGGATCTGCAAGAAACATGGATGTGAATGAGGATGAGGCTCAAATGGGTCCTGGTCGTGGGTCTAATTCTTCAAGGAATGGTGCAGAATTGAGGATACAGAAATCCTACTCACATAGGGGAGGATCCCAACTGTCCATGTTTTCTGGGTCAGTTGCAGTTCAAGGCTCTTCACGGTTTGACAATGACAGAGAGAATGGAATGAATCGGCACTGGCCAGAGGAGCGCTGCAATGCCAGATATAACGAGCTGGGTGGTGCTGAGTCCTCGGAGAAGCACCAGTGGTCTCACCATTTGCTGGACAGGCCAAAGTCTTCTCACAAGAAGGATGAACAACCCTCTGAAAAGGGGTCATCAATGGGTTACGCCCCAAAGAAGAATCGGATTCACTACTCAGGACCATTGATGCCTCCTGGGGGAAATCTTGAGGAAATGCTCAAAGAGCATGAGAAACAAATCCAACTTGCTGTCCGCAAAGCTCGTCTTGACAAAGTGAAGACCAAGAAAGCATACAATGACAACGGACAAACTGAATCGCTACTTCCCCATGGGAGAAACAACAGGTAA 2223 0.4782 MGCICSKGSSVNEYVEKNARDKELSKKSSKRLVASSRREGVVVEGYGGSNDATARLIPTQSAEDNAASTPVSWDKRQKKSMAIDNSTRAAVQKPSTMEVGMNAGQPQMTRIVSMGNGVEAAQAAAGWPSWLTAVAAEAIDGWVPRKADSFERLDKIGQGTYSSVYKARDLETGKTVALKKVRFANMDPESVRFMAREIHILRRLDHPNVMKLEGLITSRMSGSLYLVFEYMDHDLAGLASSPKIKFTEPQIKCYMQQLLRGLEHCHSRGVLHRDIKGSNLLIDNNGNLKIGDFGLATFFQPYQKQPLTSRVVTLWYRPPELLLGATSYGVAVDLWSAGCILAELYAGKPIMQGRTEVEQLHRIFKLCGSPSEEYWKRAKLPHATIFKPQHPYRRCVAETFSDFPSPALSLMDVLLAIEPERRGSASSALHNEFFTTKPLPCDTSNLPKYPPSKEFDAKLREEEARRRRAAGSKGRGHESTRKVSRESKAVPAPDANAELQVSIQRREQSNPKSKSEKFIPEEDGGSGFPIEPTKGTTRNGFSHSGKSIHPTAFGSARNMDVNEDEAQMGPGRGSNSSRNGAELRIQKSYSHRGGSQLSMFSGSVAVQGSSRFDNDRENGMNRHWPEERCNARYNELGGAESSEKHQWSHHLLDRPKSSHKKDEQPSEKGSSMGYAPKKNRIHYSGPLMPPGGNLEEMLKEHEKQIQLAVRKARLDKVKTKKAYNDNGQTESLLPHGRNNR* 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1433 740 Gene3D Phosphorylase Kinase; domain 1 137 232 - -
Vvi12g1433 740 MobiDBLite consensus disorder prediction 718 740 - -
Vvi12g1433 740 ProSiteProfiles Protein kinase domain profile. 150 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1433 740 MobiDBLite consensus disorder prediction 58 75 - -
Vvi12g1433 740 MobiDBLite consensus disorder prediction 19 34 - -
Vvi12g1433 740 SUPERFAMILY Protein kinase-like (PK-like) 144 441 IPR011009 -
Vvi12g1433 740 CDD STKc_CDK9_like 150 434 - -
Vvi12g1433 740 MobiDBLite consensus disorder prediction 635 694 - -
Vvi12g1433 740 MobiDBLite consensus disorder prediction 638 667 - -
Vvi12g1433 740 FunFam probable serine/threonine-protein kinase At1g54610 137 232 - -
Vvi12g1433 740 Pfam Protein kinase domain 150 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1433 740 SMART serkin_6 150 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1433 740 PANTHER CELL DIVISION PROTEIN KINASE 148 440 - -
Vvi12g1433 740 ProSitePatterns Protein kinases ATP-binding region signature. 156 179 IPR017441 GO:0005524
Vvi12g1433 740 MobiDBLite consensus disorder prediction 608 627 - -
Vvi12g1433 740 MobiDBLite consensus disorder prediction 453 488 - -
Vvi12g1433 740 ProSitePatterns Serine/Threonine protein kinases active-site signature. 270 282 IPR008271 GO:0004672|GO:0006468
Vvi12g1433 740 MobiDBLite consensus disorder prediction 19 38 - -
Vvi12g1433 740 MobiDBLite consensus disorder prediction 532 551 - -
Vvi12g1433 740 MobiDBLite consensus disorder prediction 440 581 - -
Vvi12g1433 740 FunFam probable serine/threonine-protein kinase At1g54610 233 474 - -
Vvi12g1433 740 Gene3D Transferase(Phosphotransferase) domain 1 233 473 - -
Vvi12g1433 740 MobiDBLite consensus disorder prediction 58 90 - -
Vvi12g1433 740 MobiDBLite consensus disorder prediction 724 740 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1433 Vvi-Chr12 20975920 20980541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1433 142 544 Core Cell Cycle Gene Families AT5G10270 44.804 4.46e-115 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vvi12g1433 Pkinase 4.4e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1433 - - vvi:100259144 1463.36