Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1428 ATGGCTCTGGTCTTGCATGCAGGGAAAACGAACAAAAATGCTTACAAGACACTCATTGCTGCGGAGTACAGCGGTATCAAAGTTGAACTGGTTCAGAACTTTGAGATGGGCGTCTCCAACAAGACTCCCGAGTTCCTTAAGATGAACCCTATCGGGAAGGTTCCCGTGTTGGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCGCGTTACGTCACTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAATATGGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAATATTGGGCATTGGTTTAGACCAAGGATTGGACGTGCTGTATACCTTCCACCGTTTGAGGAGGCTGCAATTGCTGCATTGAAGAGAGCATTAGGTGCTTTGAACACACATCTTGCTTCAAACACTTTCCTGGTGGGGCATTCTGTCACCCTGGCTGACATTGTCATGACATGCAATTTGTATATGGGATTCAGTAAGCTCATGACTAAGAGCTTTACCTCGGAGTTCCCTCATGTTGAGAGATACTTCTGGACCATGGTTAATCAACCAAATTTCAGCAAGATCTTGGGTGAGGTAAAGCAAACTGCATCAGTCCCACCTGTTTCGTCTGCAAAGAAGCCTGCCCTGCCAAAAGAACATGCCAAACCAAAGCACAAGGATGAACCAAAGAAAGAAGTCAAGAAGGAGCCAGCAAAGCCCAAAGAGGCTCCTGTTGGGGAAGAGGAAGAAGCACCAAAACCCAAACCTAAGAATCCTCTTGATCTGCTGCCCCCAAGTAAGATGATTCTGGATGAATGGAAGAGACTCTACTCAAATACCAAGACCAATTTCCGTGAGGTTGCAATTAAAGGATTCTGGGACATGTACGATCCCGAGGGATACTCTCTTTGGTTCTGTGATTACAAATACAATGACGAGAATACCGTCTCATTCGTAACTCTGAACAAGGTTGGTGGATTCCTTCAGCGGATGGATCTGGCACGCAAGTATGCTTTTGGGAAGATGCTTGTAATCGGCTCAGAGGCCCCATTCAAGGTGAAGGGGCTGTGGCTTTTCCGCGGGCAAGAGATACCTCAATTTATAATTGATGAGTGCTATGACATGGAACTCTATGAGTGGAAGAAGGTTGACATCTCGGATGAGGCCCAAAAGGAGCGTGTGAATCAGATGATAGAAGATCAGGAGCCTTTTGAGGGAGAGGCTCTTCTGGATGCCAAGTGCTTCAAAAAATGGGGGAAAAATGTGAGAAAAAGAAAATAG 1302 0.4585 MALVLHAGKTNKNAYKTLIAAEYSGIKVELVQNFEMGVSNKTPEFLKMNPIGKVPVLETPDGPVFESNAIARYVTRLKADNPLYGSSPIEYGHIEQWIDFASLEIDANIGHWFRPRIGRAVYLPPFEEAAIAALKRALGALNTHLASNTFLVGHSVTLADIVMTCNLYMGFSKLMTKSFTSEFPHVERYFWTMVNQPNFSKILGEVKQTASVPPVSSAKKPALPKEHAKPKHKDEPKKEVKKEPAKPKEAPVGEEEEAPKPKPKNPLDLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEAPFKVKGLWLFRGQEIPQFIIDECYDMELYEWKKVDISDEAQKERVNQMIEDQEPFEGEALLDAKCFKKWGKNVRKRK* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1428 433 Gene3D Glutaredoxin 1 74 - -
Vvi12g1428 433 SFLD Glutathione Transferase (cytosolic) 4 193 IPR040079 -
Vvi12g1428 433 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 263 423 IPR001662 GO:0003746|GO:0006414
Vvi12g1428 433 Gene3D - 80 217 - -
Vvi12g1428 433 MobiDBLite consensus disorder prediction 222 263 - -
Vvi12g1428 433 FunFam Elongation factor 1B gamma 1 74 - -
Vvi12g1428 433 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 87 215 IPR010987 -
Vvi12g1428 433 Pfam Glutathione S-transferase, N-terminal domain 10 75 IPR004045 -
Vvi12g1428 433 SUPERFAMILY eEF1-gamma domain 263 423 IPR036433 GO:0003746|GO:0006414
Vvi12g1428 433 FunFam Elongation factor 1-gamma 1 263 423 - -
Vvi12g1428 433 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 82 IPR004045 -
Vvi12g1428 433 SMART EF1G_2 262 370 IPR001662 GO:0003746|GO:0006414
Vvi12g1428 433 MobiDBLite consensus disorder prediction 212 270 - -
Vvi12g1428 433 FunFam Elongation factor 1 gamma 80 216 - -
Vvi12g1428 433 Pfam Glutathione S-transferase, C-terminal domain 130 197 IPR004046 -
Vvi12g1428 433 CDD GST_C_EF1Bgamma_like 90 207 - -
Vvi12g1428 433 SFLD Main (cytGST) 4 193 - -
Vvi12g1428 433 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 1 423 IPR044628 GO:0004364
Vvi12g1428 433 SUPERFAMILY Thioredoxin-like 2 85 IPR036249 -
Vvi12g1428 433 Pfam Elongation factor 1 gamma, conserved domain 262 370 IPR001662 GO:0003746|GO:0006414
Vvi12g1428 433 CDD GST_N_EF1Bgamma 3 77 - -
Vvi12g1428 433 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 263 423 IPR036433 GO:0003746|GO:0006414
Vvi12g1428 433 SUPERFAMILY GST C-terminal domain-like 80 213 IPR036282 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1428 Vvi-Chr12 20935505 20941511 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1428 1 423 Eukaryotic Initiation Factors Gene Family AT1G57720 73.193 0.0 630
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1428 K03233 - vvi:100264325 763.451