Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1426 ATGTTTCACATTTTCTCCTCTAGCATTCTCTCTCTAACTTCTCCTACTTGCCTCACAACAATGAATACTCCCTCCTCCACCAGCAAGATTACCTCTCCAAAAATATCTCCCTTTCTATCCTCTCATACGCTCCTCCTCTCCCACCTCTGGCTTGCCCCTCAAGCCAAAGAATACTCTATAAAAATATCTCCCAAAACCCACCTGAAAAGTACCCTCTCTGCTAACCGAAAACGCTTCTCTAGAATCTCCCTCCTTTACAGTGCCCTAATGGTTGAGACAGTTGAGCCTTTGACAGATGCAACCAAGCAATACCTTGCTAGTCGTTACAAAGACACAACCAAGTTTCAGGAAGAGGCGATGGCCTTACCCCTTGTCAAGATCGAAGCAGTTTTGTCCAGTGATGATCTCCAGGTTGCATCAGAGGATGCAGTGTATGATTTTGTGTCGAAGTGGGCCTGGGCTCAGTACCCAAAATTGGAGGAGCGACATGAAATCCTTGGTACGCGCCTAGGCTGCTTCATCCAGTTCTCCTATGTGACATGCAGAAAGCTTAAGAAGGTTCTAACCTGCAATGACTTTGATCAAGACCTTACATCCAAGGCTGTGCTGGAAGCTCCATTTTTCAAGGCCGATGCCCCTCATCGGCAGCGAGGCCTGGCTGCAGAGGACACTGCCCTCATCTACCATTGCTTCGTGGAGCGGGCCTACAAGTATCGTTCGGTCAAGGTTGTGGAGTTTGAATTTCCTCGACAGCCCAAGATCTTGGGTGAGGTAAAGCAAACTGCATCAGTCCCACCTGTTTCGTCTGCAAAGAAGCCTGCCCTGCCAAAAGAACATGCCAAACCAAAGCACAAGGATGAACCAAAGAAAGAAGTCAAGGAGCCAGCAAAGCCCAAAGAGGCTCCTGTTGGGGAAGAGGAAGAAGCACCAAAACCCAAACCTAAGAATCCTCTTGATCTGCTGCCCCCAAGTAAGATGATTCTGGATGAATGGAAGAGACTCTACTCAAATACCAAGACCAATTTCCGTGAGGTTGCAATTAAAGGATTCTGGGACATGTACGATCCCGAGGGATACTCTCTTTGGTTCTGTGATTACAAATACAATGCCGAGAATACCGTCTCATTCGTAACTCTGATCAAGGTTGATGGATTCCTTCAGCGGATGGATCTGGCACACAAGTATGCTTTTGGGAAGATGCTTGTAATCGGCTCAGAGGCCCCATTCAAGGTGAAAGGGCTGTGGCTTTTCCGCGGGCAAGAGATACCTCAATTTATAATTGATGAGTGCTATGACATGGAACACTATGAGTGGAAGAAGGTTGACATCTCGGATGAGGCCCAAAAGGGGCGTGTGATTCAGATGATAGAAGATCAGGAGCCTTTTGAGGGAGAGGCTCTTCTGGATGCCAAGTGCTTCAAGTGA 1425 0.4758 MFHIFSSSILSLTSPTCLTTMNTPSSTSKITSPKISPFLSSHTLLLSHLWLAPQAKEYSIKISPKTHLKSTLSANRKRFSRISLLYSALMVETVEPLTDATKQYLASRYKDTTKFQEEAMALPLVKIEAVLSSDDLQVASEDAVYDFVSKWAWAQYPKLEERHEILGTRLGCFIQFSYVTCRKLKKVLTCNDFDQDLTSKAVLEAPFFKADAPHRQRGLAAEDTALIYHCFVERAYKYRSVKVVEFEFPRQPKILGEVKQTASVPPVSSAKKPALPKEHAKPKHKDEPKKEVKEPAKPKEAPVGEEEEAPKPKPKNPLDLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNAENTVSFVTLIKVDGFLQRMDLAHKYAFGKMLVIGSEAPFKVKGLWLFRGQEIPQFIIDECYDMEHYEWKKVDISDEAQKGRVIQMIEDQEPFEGEALLDAKCFK* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1426 474 FunFam Elongation factor 1-gamma 1 314 474 - -
Vvi12g1426 474 FunFam BTB/POZ domain-containing protein POB1 106 210 - -
Vvi12g1426 474 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 57 474 IPR044628 GO:0004364
Vvi12g1426 474 Pfam Elongation factor 1 gamma, conserved domain 313 421 IPR001662 GO:0003746|GO:0006414
Vvi12g1426 474 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 314 474 IPR001662 GO:0003746|GO:0006414
Vvi12g1426 474 SUPERFAMILY eEF1-gamma domain 314 474 IPR036433 GO:0003746|GO:0006414
Vvi12g1426 474 MobiDBLite consensus disorder prediction 274 314 - -
Vvi12g1426 474 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 314 474 IPR036433 GO:0003746|GO:0006414
Vvi12g1426 474 Gene3D - 104 207 - -
Vvi12g1426 474 Pfam BTB And C-terminal Kelch 94 158 IPR011705 -
Vvi12g1426 474 SMART EF1G_2 313 421 IPR001662 GO:0003746|GO:0006414
Vvi12g1426 474 MobiDBLite consensus disorder prediction 259 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1426 Vvi-Chr12 20919166 20927490 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1426 249 474 Eukaryotic Initiation Factors Gene Family AT1G57720 69.828 4.07e-104 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1426 K03233 - vvi:100264325 345.125